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Hello!
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<div class="">First of all I want to express my gratitude for all the valuable help so far.<br class="">
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<div class="">I did a full recompile from scratch linked Gate to the correct G4. I still receive the symbol errors previously posted. </div>
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<div class="">I’m not sure on how I should interpret the results from the ldd command.</div>
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<div class="">Gustaf<br class="">
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<div class="">1 mars 2016 kl. 11:50 skrev David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" class="">David.Sarrut@creatis.insa-lyon.fr</a>>:</div>
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<div dir="ltr" class="">Hello,
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<div class="">maybe still a linking error. Be sure to recompile everything from scratch and be sure Gate is linked with the correct G4 only ... </div>
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<div class="">Check with ldd to List Dynamic Dependencies of an executable, it could help</div>
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<div class="">David</div>
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<div class="gmail_quote">On Tue, Mar 1, 2016 at 11:29 AM, Gustaf Lönn <span dir="ltr" class="">
<<a href="mailto:gustaflo@kth.se" target="_blank" class="">gustaflo@kth.se</a>></span> wrote:<br class="">
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<div style="word-wrap:break-word" class=""><span class="">Hello!
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<div class="">I tried to recompile both G4 and Gate without the external clhep. That took care of the initial library error. However, I received the following error when trying to run Gate:</div>
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<div class="">Symbol `_ZTV19G4GammaParticipants' has different size in shared object, consider re-linking</div>
<div class="">Gate: symbol lookup error: Gate: undefined symbol: _ZN12G4AllocStats6numCatE</div>
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<div class="">I think ”GammaParticipants" originate from G4GammaParicipants.hh and ”AllocStats" from G4EnhancedVectorAllocator.hh</div>
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<div class="">In my bash script I removed the path and library path associated with system clhep, otherwise it is unchanged.</div>
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<div class="">any ideas? </div>
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</span><span class="HOEnZb"><font color="#888888" class="">
<div class="">//Gustaf</div>
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<div class="">1 mars 2016 kl. 08:01 skrev David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank" class="">David.Sarrut@creatis.insa-lyon.fr</a>>:</div>
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<div dir="ltr" class="">Hello,
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<div class="">it should be a path issue. The simplest way is to use the G4 embedded clhep and to not use external clhep. Once G4 is compiled, recompile Gate, without external clhep also. </div>
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<div class="">hope it helps, </div>
<div class="">David</div>
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<div class="gmail_quote">On Mon, Feb 29, 2016 at 6:52 PM, Gustaf Lönn <span dir="ltr" class="">
<<a href="mailto:gustaflo@kth.se" target="_blank" class="">gustaflo@kth.se</a>></span> wrote:<br class="">
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Hello!<br class="">
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I have encountered a problem with the CLHEP libraries when I’m trying to run Gate. Instead of searching for the external 2.2.0.4 CLHEP library the program wants to use the libG4chlep and therefore terminates. I use x86 Ubuntu 64bit.<br class="">
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I have followed the installation/compilation instructions and set the external CLHEP options to ”on” and set the following paths:<br class="">
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Geant4<br class="">
CLHEP_CONFIG_EXECUTABLE: /home/gate/gate_sources2/2.2.0.4-install/bin/clhep-config<br class="">
CLHEP_INCLUDE_DIR: /home/gate/gate_sources2/2.2.0.4-install/include<br class="">
CLHEP_LIBRARY: /home/gate/gate_sources2/2.2.0.4-install/lib/libCLHEP.so<br class="">
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Gate<br class="">
CLHEP_CONFIG_EXECUTABLE: /home/gate/gate_sources2/2.2.0.4-install/bin/clhep-config<br class="">
CLHEP_INCLUDE_DIR: /home/gate/gate_sources2/2.2.0.4-install/include<br class="">
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In my bash script I have the following:<br class="">
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export PATH=$PATH:/home/gate/gate_sources2/2.2.0.4-install/bin: /home/gate/gate_sources2/2.2.0.4-install/include<br class="">
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export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/gate/gate_sources2/2.2.0.4-install/lib<br class="">
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source /home/gate/gate_sources2/root/bin/thisroot.sh<br class="">
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source /home/gate/gate_sources2/geant4.10.01.p03-install/bin/geant4.sh<br class="">
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PATH=$PATH:/home/gate/gate_sources2/gate_v7.1-install/bin<br class="">
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export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/gate/gate_sources2/geant4.10.01.p03-install/lib64<br class="">
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Does anyone have any idea about what might be wrong? I’m grateful for any suggestions!<br class="">
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Best Regards<br class="">
Gustaf L<br class="">
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<div dir="ltr" class="">David Sarrut, Phd<br class="">
Directeur de recherche CNRS<br class="">
CREATIS, UMR CNRS 5220, Inserm U1206
<div class="">Centre de lutte contre le cancer Léon Bérard<br class="">
28 rue Laënnec, 69373 Lyon cedex 08<br class="">
Tel : <a href="tel:04%2078%2078%2051%2051" value="+33478785151" target="_blank" class="">
04 78 78 51 51</a> / <a href="tel:06%2074%2072%2005%2042" value="+33674720542" target="_blank" class="">
06 74 72 05 42</a><br class="">
<a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank" class="">http://www.creatis.insa-lyon.fr/~dsarrut</a><br class="">
_________________________________</div>
<div class=""> "2 + 2 = 5, for extremely large values of 2"<br class="">
_________________________________</div>
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<div dir="ltr" class="">David Sarrut, Phd<br class="">
Directeur de recherche CNRS<br class="">
CREATIS, UMR CNRS 5220, Inserm U1206
<div class="">Centre de lutte contre le cancer Léon Bérard<br class="">
28 rue Laënnec, 69373 Lyon cedex 08<br class="">
Tel : 04 78 78 51 51 / 06 74 72 05 42<br class="">
<a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank" class="">http://www.creatis.insa-lyon.fr/~dsarrut</a><br class="">
_________________________________</div>
<div class=""> "2 + 2 = 5, for extremely large values of 2"<br class="">
_________________________________</div>
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