<html><head></head><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue-Light, Helvetica Neue Light, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_1_1452664793285_2546"><span id="yui_3_16_0_1_1452664793285_2617">Hi David,</span></div><div id="yui_3_16_0_1_1452664793285_2439"><span id="yui_3_16_0_1_1452664793285_2438">I have only one version of Gate and Geant4 installed - Gate v7.0 and Geant4.9.6.p04.</span></div><div id="yui_3_16_0_1_1452664793285_2439"><span><br></span></div><div id="yui_3_16_0_1_1452664793285_2439"><span id="yui_3_16_0_1_1452664793285_2513">I successfully run benchmark simulation - benchmarkSPECT, with or without visualization.</span></div><div id="yui_3_16_0_1_1452664793285_2439"><span><br></span></div><div id="yui_3_16_0_1_1452664793285_2439"><span id="yui_3_16_0_1_1452664793285_2752">So it's somthing with my code i think. What can i</span> disable/enable to fix this bug?</div><div id="yui_3_16_0_1_1452664793285_2439"><span><br></span></div><div id="yui_3_16_0_1_1452664793285_2439"><span>Best regards</span></div><div id="yui_3_16_0_1_1452664793285_2439"><span>Michał Knap</span></div> <div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: HelveticaNeue-Light, Helvetica Neue Light, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"><font size="2" face="Arial"> 18:11 wtorek, 2016-1-12, David Boersma <david.boersma@physics.uu.se> napisał(a):<br></font></div> <br><br> <div class="y_msg_container">Hi Michał,<br clear="none"><br clear="none">Some more simple questions:<br clear="none"><br clear="none">* Can you run macros from the example directory successfully, or do some <br clear="none">of them result in this same error?<br clear="none"><br clear="none"><br clear="none">* Do you have multiple versions of Geant4 and/or Root installed? If yes, <br clear="none">could you check with the following command:<br clear="none"><br clear="none">ldd $(which Gate)<br clear="none"><br clear="none">that your Gate executable gets indeed linked to the same versions as the <br clear="none">ones you configured during installation of Gate? If the versions do not <br clear="none">match: then fix your environment, or reinstall Gate (from scratch).<br clear="none"><br clear="none"><br clear="none"><br clear="none">If these simple questions do not help, then I think the next step is to <br clear="none">make a minimalistic version of your macro that demonstrates the error <br clear="none">you are seeing and post it here on the list, so that other people have a <br clear="none">chance to reproduce this problem. Please also specify how you run the <br clear="none">Gate command (with which options).<br clear="none"><br clear="none">HTH,<br clear="none">David Boersma<br clear="none"><br clear="none">Den 12/01/2016 kl. 17:35, skrev Michal Knap:<br clear="none">> Hi David,<br clear="none">> I checked you idea but i use only 50-60% RAM memory.<br clear="none">> While i'm running simulation i do not use any other apps.<br clear="none">> Even browser is closed.<br clear="none">><br clear="none">> I have intel i5 vPRO, 8GB RAM, 120 GB SSD<br clear="none">> Ubuntu 14.04 LTS, Geant4.9.6.p04,Gate7.0,Root 5.34.34<br clear="none">><br clear="none">> Kind regards<br clear="none">><br clear="none">><br clear="none">> 17:01 wtorek, 2016-1-12, David Boersma <<a shape="rect" ymailto="mailto:david.boersma@physics.uu.se" href="mailto:david.boersma@physics.uu.se">david.boersma@physics.uu.se</a>><br clear="none">> napisał(a):<br clear="none">><br clear="none">><br clear="none">><br clear="none">><br clear="none">> Hi Michał,<br clear="none">><br clear="none">> My first guess would be a memory problem. Could you check with some<br clear="none">> resource monitor ("top" or "htop" on linux, "Activity Monitory" on<br clear="none">> MacOSX) how much RAM is used on your machine, by which programs?<br clear="none">><br clear="none">> It could be that other programs than GATE (e.g. a web browser) are using<br clear="none">> so much RAM that there is not enough available for your GATE<br clear="none">> application. Then this is easily solved by quitting those other programs.<br clear="none">><br clear="none">> It could be that you configured GATE too optimistically, e.g. using a<br clear="none">> scoring volume with too many voxels. Then you should either use a more<br clear="none">> modest configuration, or run on a bigger machine.<br clear="none">><br clear="none">> There are many other possible causes, but these are the easiest ones, I<br clear="none">> can think of. It would be good if you could tell us whether these are<br clear="none">> already ruled out.<br clear="none">><br clear="none">> Also: when reporting problems and asking for help, it could be helpful<br clear="none">> if you would add some basic specs about the OS (+version) and the<br clear="none">> hardware (in particular how much RAM your have). Which version of GATE<br clear="none">> are you using, with which version of Geant4? How did you install it? Did<br clear="none">> you install it recently or long ago?<br clear="none">><br clear="none">> HTH,<br clear="none">> David<br clear="none">><br clear="none">> Den 12/01/2016 kl. 15:55, skrev Michal Knap:<br clear="none">> > Hi All,<br clear="none">> > As i'm trying to simulate a minigammacamera i'm getting this error<br clear="none">> message.<br clear="none">> > I still do not know how to fix this.<br clear="none">> > Can anybody know what is wrong?<br clear="none">> > //<br clear="none">> > /[Acquisition-0] Slice 0 from 0 to 37.5 s [slice=37.5 s], final stop at<br clear="none">> > 150 s./<br clear="none">> > /terminate called after throwing an instance of 'std::bad_alloc'/<br clear="none">> > / what(): std::bad_alloc/<br clear="none">> > /Przerwane (core dumped)/<br clear="none">> > /<br clear="none">> > /<br clear="none">> > I'll be very thankful for any help.<br clear="none">> ><br clear="none">> > Thanks in advance<br clear="none">> ><br clear="none">> > Kind regards<br clear="none">> > Michał Knap<br clear="none">><br clear="none">> ><br clear="none">> ><br clear="none">> > _______________________________________________<br clear="none">> > Gate-users mailing list<br clear="none">> > <a shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br clear="none">> <mailto:<a shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a>><br clear="none">> > <a shape="rect" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br clear="none">> ><br clear="none">> _______________________________________________<br clear="none">> Gate-users mailing list<br clear="none">> <a shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br clear="none">> <mailto:<a shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a>><div class="yqt7229367748" id="yqtfd07317"><br clear="none">> <a shape="rect" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br clear="none">><br clear="none"></div><br><br></div> </div> </div> </div></div></body></html>