<div dir="ltr">Hi Roque,<div> </div><div>I have not worked with gjs before, but I do know that for simulations that don't involve optical photons GATE doesn't use a whole lot of memory. This is perfectly normal, and you can get faster execution times if you multi-thread your simulations.</div><div> </div><div>It looks like the instructions for installing gjs haven't been updated in several years, since they still refer to GATE 6.1. I am pretty sure that you can still use the instructions available at <a href="http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV7.1#Installation_of_cluster_tools">http://wiki.opengatecollaboration.org/index.php/New_Compilation_ProcedureV7.1#Installation_of_cluster_tools</a> and replace /opt/simulation/gate6_1 with the appropriate path for your GATE 7.1 installation.</div><div> </div><div>Hope this helps!</div><div> </div><div>-Bryan <div class="gmail_extra"> <div class="gmail_quote">On Fri, Oct 16, 2015 at 5:00 AM, <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>> wrote: <blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Re: Gate sometimes waits for nothing, why? (Simon Stute) 2. Re: Pixelated SPECT problem (Simon Stute) 3. Installing gjs (Santos, Roque) ---------------------------------------------------------------------- Message: 1 Date: Thu, 15 Oct 2015 16:02:21 +0200 From: Simon Stute <<a href="mailto:gate.stute@gmail.com">gate.stute@gmail.com</a>> To: Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> Cc: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Gate sometimes waits for nothing, why? Message-ID: <CADGvxeNCEK-WTp6qVKXxk7GEvqYvAQjJNHes6-j6Emt41o=<a href="mailto:jxg@mail.gmail.com">jxg@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hi, Just add the command /vis/disable at the beginning to fully disable the visualization stuff. Cheers, Simon On Fri, Oct 9, 2015 at 5:22 PM, Anders Garpebring <<a href="mailto:anders.garpebring@umu.se">anders.garpebring@umu.se</a>> wrote: > Dear gate users, > > > > Im working on running a batch of Gate simulations. To test my macro I want > to run through all 28 simulation with just a single event for each > simulation. However, the simulation often get stuck seemingly doing nothing > for maybe 30 s. Why is this? Typically when I run just a single execution > of my script it just takes a second or two. If I run it again immediately > after it can take 30 seconds to finish. > > > > I get no errors but some warnings about the viewer (which I try to switch > off). > > > > WARNING: Scene "none" not found. > > /vis/scene/list to see scenes. > > > > WARNING: command "/vis/viewer/update" could not be applied: no current > viewer > > > > In my code there are no references to the visualization. > > > > Best, > > Anders > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151015/8bd301f6/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151015/8bd301f6/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Thu, 15 Oct 2015 16:06:34 +0200 From: Simon Stute <<a href="mailto:gate.stute@gmail.com">gate.stute@gmail.com</a>> To: Chao Guo <<a href="mailto:chaoguomedicalphysics@gmail.com">chaoguomedicalphysics@gmail.com</a>> Cc: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Pixelated SPECT problem Message-ID: <CADGvxeOp=<a href="mailto:eZTDVfBC_HCKU8ejQN8pySyOc57zcDsx0SscpiBaA@mail.gmail.com">eZTDVfBC_HCKU8ejQN8pySyOc57zcDsx0SscpiBaA@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hi, The projection output is mainly designed to work on a monolithic crystal (without a concrete definition of geometric pixels) as you can define the number of pixels inside the projection output. The behaviour of the projection output when you are actually using pixels defined in the system is quite unknown to my knowledge. Maybe an expert in SPECT simulations could give you a more complete answer. Cheers, Simon On Wed, Oct 14, 2015 at 4:43 AM, Chao Guo <<a href="mailto:chaoguomedicalphysics@gmail.com">chaoguomedicalphysics@gmail.com</a>> wrote: > Dear all, > > > > I?m trying to use the Pixel level under SPECT to do the pixelated crystal > and I met some problems. I use the crystal level and it work perfect and > then I add the pixel level, the projection image shows me something at the > center of the image but the actual setup is not at center. Does anyone have > any idea about this? > > > > I use the example code from the optical imaging benchmark macro: > > > > /gate/pixel/geometry/setXLength 2.0 cm > > /gate/pixel/geometry/setYLength 2.0 cm > > /gate/pixel/geometry/setZLength 1.0 cm > > /gate/pixel/setMaterial Air > > /gate/pixel/placement/setTranslation 0 0 0 cm > > /gate/pixel/vis/setColor red > > /gate/pixel/repeaters/insert cubicArray > > /gate/pixel/cubicArray/setRepeatNumberX 5 > > /gate/pixel/cubicArray/setRepeatNumberY 5 > > /gate/pixel/cubicArray/setRepeatNumberZ 1 > > /gate/pixel/cubicArray/setRepeatVector 2.1 2.1 0 cm > > /gate/pixel/vis/forceSolid > > /gate/pixel/attachCrystalSD > > /gate/systems/OpticalSystem/pixel/attach pixel > > > > Please let me know if you guys have any suggestions, thank you > > > > Chao > > > > > ------------------------------ > [image: Avast logo] <<a href="https://www.avast.com/antivirus" rel="noreferrer" target="_blank">https://www.avast.com/antivirus</a>> > > This email has been checked for viruses by Avast antivirus software. > <a href="http://www.avast.com" rel="noreferrer" target="_blank">www.avast.com</a> <<a href="https://www.avast.com/antivirus" rel="noreferrer" target="_blank">https://www.avast.com/antivirus</a>> > > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151015/8367c5bb/attachment-0001.html" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20151015/8367c5bb/attachment-0001.html</a>> ------------------------------ Message: 3 Date: Fri, 16 Oct 2015 04:33:59 +0000 From: "Santos, Roque" <<a href="mailto:rsantost@vols.utk.edu">rsantost@vols.utk.edu</a>> To: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] Installing gjs Message-ID: <<a href="mailto:4FDB5087-C879-47ED-B27F-5BADF04A0B14@vols.utk.edu">4FDB5087-C879-47ED-B27F-5BADF04A0B14@vols.utk.edu</a>> Content-Type: text/plain; charset="us-ascii" Hello all, I'm trying to run gate V7.1 in Ubuntu, I've installed properly, but Gate is jus using 5%of the whole memory. I thought it can be solved by splitting the files among the cores of my computer, so I tried to install gjs. So far I wasn't able to install it. I think is because I cannot find the file env_gate.sh, so whe I try to make gjs it gives me an error. Can somebody help me. What is the procedure to install gjs. Thank you Sent from my iPad ------------------------------ _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" rel="noreferrer" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> End of Gate-users Digest, Vol 113, Issue 13 ******************************************* </blockquote></div> </div></div></div>