[G4] [G4] ************************************************************* [G4] Geant4 version Name: geant4-10-01-patch-02 [MT] (19-June-2015) [G4] Copyright : Geant4 Collaboration [G4] Reference : NIM A 506 (2003), 250-303 [G4] WWW : http://cern.ch/geant4 [G4] ************************************************************* [G4] [Core-0] Initialization of geometry [Core-0] Initialization of physics [Core-0] Initialization of actors [G4] Available UI session types: [ Qt, GAG, tcsh, csh ] [Core-0] [Core-0] ********************************************************************** [Core-0] GATE version name: gate_v7.1 [Core-0] Copyright : OpenGATE Collaboration [Core-0] Reference : Phys. Med. Biol. 49 (2004) 4543-4561 [Core-0] Reference : Phys. Med. Biol. 56 (2011) 881-901 [Core-0] WWW : http://www.opengatecollaboration.org [Core-0] ********************************************************************** [Core-0] GPU support activated [Core-0] [Core-0] You are using Geant4 version 10.1.2 [Core-0] Starting macro mac/main.mac QObject::connect: Cannot connect (null)::textEdited ( const QString &) to G4OpenGLQtViewer::changeSearchSelection() ===== XML PATH ====: ./Materials.xml I/O warning : failed to load external entity "./Materials.xml" ===== XML PATH ====: 0 I/O warning: Discard the previous warning if your simulation doesn't transport OPTICAL PHOTONS. Otherwise, please copy the Materials.xml file from the gate-source directory in the directory where you run your main macro. ===== XML PATH ====: ./Materials.xml I/O warning : failed to load external entity "./Materials.xml" ===== XML PATH ====: 0 I/O warning: Discard the previous warning if your simulation doesn't transport OPTICAL PHOTONS. Otherwise, please copy the Materials.xml file from the gate-source directory in the directory where you run your main macro. ===== XML PATH ====: ./Materials.xml I/O warning : failed to load external entity "./Materials.xml" ===== XML PATH ====: 0 I/O warning: Discard the previous warning if your simulation doesn't transport OPTICAL PHOTONS. Otherwise, please copy the Materials.xml file from the gate-source directory in the directory where you run your main macro. [Physic-0] The following Geant4's physic-list is enabled :QGSP_BERT_HP_EMY [Core-0] Initialization of geometry [Core-0] Initialization of physics [Core-0] Initialization of actors [Acquisition-0] [Acquisition-0] ============= Source initialization ============= [Acquisition-0] [Acquisition-0] ============= Acquisition starts! ============= [Acquisition-0] Simulation start time = 0 sec [Acquisition-0] Simulation end time = 1 sec [Acquisition-0] Simulation will have = 1 run(s) [Acquisition-0] Slice 0 from 0 to 1 s [slice=1 s], final stop at 1 s. [Core-0] End of macro mac/main.mac GateApplicationMgr.cc (l.218): Error in GateApplicationMgr::GetTimeSlice, run=2 *** Break *** segmentation violation =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== from libstdcxx.v6.printers import register_libstdcxx_printers Thread 2 (Thread 0x7f99d6dcc700 (LWP 24189)): #0 0x00007f9a016b212d in poll () at ../sysdeps/unix/syscall-template.S:81 #1 0x00007f99f9868fe4 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #2 0x00007f99f986930a in g_main_loop_run () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #3 0x00007f99f3b67336 in ?? () from /usr/lib/x86_64-linux-gnu/libgio-2.0.so.0 #4 0x00007f99f988df05 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #5 0x00007f9a024e2182 in start_thread (arg=0x7f99d6dcc700) at pthread_create.c:312 #6 0x00007f9a016bf47d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:111 Thread 1 (Thread 0x7f9a0a3bef40 (LWP 24186)): #0 0x00007f9a01685b99 in __libc_waitpid (pid=24192, stat_loc=stat_loc entry=0x7ffda851d840, options=options entry=0) at ../sysdeps/unix/sysv/linux/waitpid.c:40 #1 0x00007f9a0160b2e2 in do_system (line=) at ../sysdeps/posix/system.c:148 #2 0x00007f9a046b3eb3 in TUnixSystem::StackTrace() () from /usr/local/root_v5.34.32/lib/libCore.so #3 0x00007f9a046b5adc in TUnixSystem::DispatchSignals(ESignals) () from /usr/local/root_v5.34.32/lib/libCore.so #4 #5 0x00007f99ff424642 in QThreadStorageData::get() const () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #6 0x00007f99ffc6ed76 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #7 0x00007f99ffc6ee52 in QFontPrivate::engineForScript(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #8 0x00007f99ffca4799 in QTextEngine::fontEngine(QScriptItem const&, QFixed*, QFixed*, QFixed*) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #9 0x00007f99ffca5113 in QTextEngine::shapeTextWithHarfbuzz(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #10 0x00007f99ffca6212 in QTextEngine::shapeText(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #11 0x00007f99ffca6535 in QTextEngine::shape(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #12 0x00007f99ffcb77df in QTextLine::layout_helper(int) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #13 0x00007f99ffced10d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #14 0x00007f99ffcf46a3 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #15 0x00007f99ffcf303d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #16 0x00007f99ffcf370d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #17 0x00007f99ffcf61c0 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #18 0x00007f99ffcf71fe in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #19 0x00007f99ffcd4d21 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #20 0x00007f99ffcfbb45 in QTextCursor::endEditBlock() () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #21 0x00007f99ffc97528 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #22 0x00007f99ffeb36e9 in QTextEdit::append(QString const&) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #23 0x00007f9a087efd7c in G4UIQt::ReceiveG4cout(G4String const&) () from /usr/local/lib/libG4interfaces.so #24 0x00007f9a0506a136 in G4strstreambuf::sync() () from /usr/local/lib/libG4intercoms.so #25 0x00007f9a01f39fee in std::ostream::flush() () from /usr/lib/x86_64-linux-gnu/libstdc++.so.6 #26 0x00007f9a0583badc in G4PhysicalVolumeStore::~G4PhysicalVolumeStore() () from /usr/local/lib/libG4geometry.so #27 0x00007f9a01601259 in __run_exit_handlers (status=-1, listp=0x7f9a019836c8 <__exit_funcs>, run_list_atexit=run_list_atexit entry=true) at exit.c:82 #28 0x00007f9a016012a5 in __GI_exit (status=) at exit.c:104 #29 0x00000000008a0f62 in GateApplicationMgr::GetEndTimeSlice(int) () #30 0x0000000000857483 in GateSourceMgr::PrepareNextRun(G4Run const*) () #31 0x00000000008a9994 in GatePrimaryGeneratorAction::GenerateSimulationPrimaries(G4Event*) () #32 0x00000000008a9b9d in GatePrimaryGeneratorAction::GeneratePrimaries(G4Event*) () #33 0x00007f9a08038d81 in G4RunManager::GenerateEvent(int) () from /usr/local/lib/libG4run.so #34 0x00007f9a08034384 in G4RunManager::ProcessOneEvent(int) () from /usr/local/lib/libG4run.so #35 0x00007f9a08032c03 in G4RunManager::DoEventLoop(int, char const*, int) () from /usr/local/lib/libG4run.so #36 0x00007f9a080329fe in G4RunManager::BeamOn(int, char const*, int) () from /usr/local/lib/libG4run.so #37 0x00007f9a0804991c in G4RunMessenger::SetNewValue(G4UIcommand*, G4String) () from /usr/local/lib/libG4run.so #38 0x00007f9a0504ec15 in G4UIcommand::DoIt(G4String) () from /usr/local/lib/libG4intercoms.so #39 0x00007f9a05066cf8 in G4UImanager::ApplyCommand(char const*) () from /usr/local/lib/libG4intercoms.so #40 0x00007f9a087fc26e in G4VBasicShell::ExecuteCommand(G4String const&) () from /usr/local/lib/libG4interfaces.so #41 0x00007f9a08800caa in G4VBasicShell::ApplyShellCommand(G4String const&, bool&, bool&) () from /usr/local/lib/libG4interfaces.so #42 0x00007f9a087ece3b in G4UIQt::CommandEnteredCallback() () from /usr/local/lib/libG4interfaces.so #43 0x00007f99ff53c87a in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #44 0x00007f99ffe59975 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #45 0x00007f99ff53c87a in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #46 0x00007f99ffe60a6c in QLineControl::processKeyEvent(QKeyEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #47 0x00007f99ffe5608a in QLineEdit::keyPressEvent(QKeyEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #48 0x00007f99ffaa93e4 in QWidget::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #49 0x00007f99ffe5b3c1 in QLineEdit::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #50 0x00007f99ffa59e2c in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #51 0x00007f99ffa616f1 in QApplication::notify(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #52 0x00007f99ff5284dd in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #53 0x00007f99ffaf9027 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #54 0x00007f99ffaf93c9 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #55 0x00007f99ffad3417 in QApplication::x11ProcessEvent(_XEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #56 0x00007f99ffafbb32 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #57 0x00007f99f9868e04 in g_main_context_dispatch () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #58 0x00007f99f9869048 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #59 0x00007f99f98690ec in g_main_context_iteration () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #60 0x00007f99ff5557be in QEventDispatcherGlib::processEvents(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #61 0x00007f99ffafbbe6 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #62 0x00007f99ff5270af in QEventLoop::processEvents(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #63 0x00007f99ff5273a5 in QEventLoop::exec(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #64 0x00007f99ff52cb79 in QCoreApplication::exec() () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #65 0x00007f9a087df2ed in G4UIQt::SessionStart() () from /usr/local/lib/libG4interfaces.so #66 0x00000000004f3338 in main () =========================================================== The lines below might hint at the cause of the crash. If they do not help you then please submit a bug report at http://root.cern.ch/bugs. Please post the ENTIRE stack trace from above as an attachment in addition to anything else that might help us fixing this issue. =========================================================== #5 0x00007f99ff424642 in QThreadStorageData::get() const () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #6 0x00007f99ffc6ed76 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #7 0x00007f99ffc6ee52 in QFontPrivate::engineForScript(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #8 0x00007f99ffca4799 in QTextEngine::fontEngine(QScriptItem const&, QFixed*, QFixed*, QFixed*) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #9 0x00007f99ffca5113 in QTextEngine::shapeTextWithHarfbuzz(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #10 0x00007f99ffca6212 in QTextEngine::shapeText(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #11 0x00007f99ffca6535 in QTextEngine::shape(int) const () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #12 0x00007f99ffcb77df in QTextLine::layout_helper(int) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #13 0x00007f99ffced10d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #14 0x00007f99ffcf46a3 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #15 0x00007f99ffcf303d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #16 0x00007f99ffcf370d in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #17 0x00007f99ffcf61c0 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #18 0x00007f99ffcf71fe in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #19 0x00007f99ffcd4d21 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #20 0x00007f99ffcfbb45 in QTextCursor::endEditBlock() () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #21 0x00007f99ffc97528 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #22 0x00007f99ffeb36e9 in QTextEdit::append(QString const&) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #23 0x00007f9a087efd7c in G4UIQt::ReceiveG4cout(G4String const&) () from /usr/local/lib/libG4interfaces.so #24 0x00007f9a0506a136 in G4strstreambuf::sync() () from /usr/local/lib/libG4intercoms.so #25 0x00007f9a01f39fee in std::ostream::flush() () from /usr/lib/x86_64-linux-gnu/libstdc++.so.6 #26 0x00007f9a0583badc in G4PhysicalVolumeStore::~G4PhysicalVolumeStore() () from /usr/local/lib/libG4geometry.so #27 0x00007f9a01601259 in __run_exit_handlers (status=-1, listp=0x7f9a019836c8 <__exit_funcs>, run_list_atexit=run_list_atexit entry=true) at exit.c:82 #28 0x00007f9a016012a5 in __GI_exit (status=) at exit.c:104 #29 0x00000000008a0f62 in GateApplicationMgr::GetEndTimeSlice(int) () #30 0x0000000000857483 in GateSourceMgr::PrepareNextRun(G4Run const*) () #31 0x00000000008a9994 in GatePrimaryGeneratorAction::GenerateSimulationPrimaries(G4Event*) () #32 0x00000000008a9b9d in GatePrimaryGeneratorAction::GeneratePrimaries(G4Event*) () #33 0x00007f9a08038d81 in G4RunManager::GenerateEvent(int) () from /usr/local/lib/libG4run.so #34 0x00007f9a08034384 in G4RunManager::ProcessOneEvent(int) () from /usr/local/lib/libG4run.so #35 0x00007f9a08032c03 in G4RunManager::DoEventLoop(int, char const*, int) () from /usr/local/lib/libG4run.so #36 0x00007f9a080329fe in G4RunManager::BeamOn(int, char const*, int) () from /usr/local/lib/libG4run.so #37 0x00007f9a0804991c in G4RunMessenger::SetNewValue(G4UIcommand*, G4String) () from /usr/local/lib/libG4run.so #38 0x00007f9a0504ec15 in G4UIcommand::DoIt(G4String) () from /usr/local/lib/libG4intercoms.so #39 0x00007f9a05066cf8 in G4UImanager::ApplyCommand(char const*) () from /usr/local/lib/libG4intercoms.so #40 0x00007f9a087fc26e in G4VBasicShell::ExecuteCommand(G4String const&) () from /usr/local/lib/libG4interfaces.so #41 0x00007f9a08800caa in G4VBasicShell::ApplyShellCommand(G4String const&, bool&, bool&) () from /usr/local/lib/libG4interfaces.so #42 0x00007f9a087ece3b in G4UIQt::CommandEnteredCallback() () from /usr/local/lib/libG4interfaces.so #43 0x00007f99ff53c87a in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #44 0x00007f99ffe59975 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #45 0x00007f99ff53c87a in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #46 0x00007f99ffe60a6c in QLineControl::processKeyEvent(QKeyEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #47 0x00007f99ffe5608a in QLineEdit::keyPressEvent(QKeyEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #48 0x00007f99ffaa93e4 in QWidget::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #49 0x00007f99ffe5b3c1 in QLineEdit::event(QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #50 0x00007f99ffa59e2c in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #51 0x00007f99ffa616f1 in QApplication::notify(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #52 0x00007f99ff5284dd in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #53 0x00007f99ffaf9027 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #54 0x00007f99ffaf93c9 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #55 0x00007f99ffad3417 in QApplication::x11ProcessEvent(_XEvent*) () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #56 0x00007f99ffafbb32 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #57 0x00007f99f9868e04 in g_main_context_dispatch () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #58 0x00007f99f9869048 in ?? () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #59 0x00007f99f98690ec in g_main_context_iteration () from /lib/x86_64-linux-gnu/libglib-2.0.so.0 #60 0x00007f99ff5557be in QEventDispatcherGlib::processEvents(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #61 0x00007f99ffafbbe6 in ?? () from /usr/lib/x86_64-linux-gnu/libQtGui.so.4 #62 0x00007f99ff5270af in QEventLoop::processEvents(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #63 0x00007f99ff5273a5 in QEventLoop::exec(QFlags) () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #64 0x00007f99ff52cb79 in QCoreApplication::exec() () from /usr/lib/x86_64-linux-gnu/libQtCore.so.4 #65 0x00007f9a087df2ed in G4UIQt::SessionStart() () from /usr/local/lib/libG4interfaces.so #66 0x00000000004f3338 in main () ===========================================================