<html> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> </head> <body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""> Dear Gaters <div class=""><br class=""> </div> <div class="">Since I was not the only one having this problem (the user <span lang="EN-US" class="">Gwennaëlle MARIN had the same experience few weeks ago).</span></div> <div class=""><span lang="EN-US" class="">We both used <b class="">Scientific Linux 6</b>,<b class=""> gate v7.1</b> and <b class="">geant4.10.01</b> (no patch-01).</span></div> <div class=""><span lang="EN-US" class=""><br class=""> </span></div> <div class=""><span lang="EN-US" class="">I’m assuming that is not an issue with Geant4, because I found nothing related with this in the Geant4 forum.</span></div> <div class="">Is it possible that the Gate developers take a look to this?</div> <div class=""><br class=""> </div> <div class="">Cheers, Pedro</div> <div class=""><br class=""> </div> <div class=""><br class=""> </div> <div class=""><br class=""> </div> <div class=""><br class=""> <div> <blockquote type="cite" class=""> <div class="">No dia 16/06/2015, às 18:50, pedro correia <<a href="mailto:pmcorreia@ua.pt" class="">pmcorreia@ua.pt</a>> escreveu:</div> <br class="Apple-interchange-newline"> <div class="">Dear Gaters<br class=""> <br class=""> I’m having some problems with Gate7.1 and geant4.10.01.<br class=""> <br class=""> I compile both softwares apparently with no erros, just few warnings in Gate, and when I try to run Gate with some macro file (PET_CylindricalPET_System.mac for example), I got the following output.<br class=""> I tried to reinstall Root, Geant4 and Gate several times, but I always get the same output. The optical flag is ON.<br class=""> I think that may be something related with libxml2 library, do you have any suggestion?<br class=""> <br class=""> Best regards,<br class=""> Pedro Correia<br class=""> <br class=""> [Core-0] You are using Geant4 version 10.1.0<br class=""> [Core-0] Starting macro Optical_System.mac<br class=""> ===== XML PATH ====: ./Materials.xml<br class=""> <br class=""> *** Break *** segmentation violation<br class=""> <br class=""> <br class=""> <br class=""> ===========================================================<br class=""> There was a crash.<br class=""> This is the entire stack trace of all threads:<br class=""> ===========================================================<br class=""> <br class=""> Thread 2 (Thread 0x7eff492f8700 (LWP 9249)):<br class=""> #0 0x00000039a54df0d3 in poll () from /lib64/libc.so.6<br class=""> #1 0x00000039a8409aaa in ?? () from /usr/lib64/libxcb.so.1<br class=""> #2 0x00000039a840b1c8 in xcb_wait_for_event () from /usr/lib64/libxcb.so.1<br class=""> #3 0x00007eff4b3f23a1 in ?? () from /usr/lib64/qt5/plugins/platforms/libqxcb.so<br class=""> #4 0x00007eff52fe6819 in ?? () from /usr/lib64/libQt5Core.so.5<br class=""> #5 0x00000039b40aa754 in ?? () from /usr/lib64/nvidia/libGL.so.1<br class=""> #6 0x00000039a5c079d1 in start_thread () from /lib64/libpthread.so.0<br class=""> #7 0x00000039a54e88fd in clone () from /lib64/libc.so.6<br class=""> <br class=""> Thread 1 (Thread 0x7eff519e4240 (LWP 9248)):<br class=""> #0 0x00000039a54ac65d in waitpid () from /lib64/libc.so.6<br class=""> #1 0x00000039a543e609 in do_system () from /lib64/libc.so.6<br class=""> #2 0x00000039a543e940 in system () from /lib64/libc.so.6<br class=""> #3 0x0000003867a6a454 in TUnixSystem::StackTrace() () from /usr/lib64/root/libCore.so<br class=""> #4 0x0000003867a69873 in TUnixSystem::DispatchSignals(ESignals) () from /usr/lib64/root/libCore.so<br class=""> #5 <signal handler called><br class=""> #6 0x00000039a5529170 in __strncmp_sse42 () from /lib64/libc.so.6<br class=""> #7 0x00007eff54d5f885 in __xmlParserInputBufferCreateFilename () from /usr/lib64/libxml2.so.2<br class=""> #8 0x00007eff54d3480d in xmlNewInputFromFile () from /usr/lib64/libxml2.so.2<br class=""> #9 0x00007eff54d389f6 in xmlCreateURLParserCtxt () from /usr/lib64/libxml2.so.2<br class=""> #10 0x00007eff54d4d6ae in xmlSAXParseFileWithData () from /usr/lib64/libxml2.so.2<br class=""> #11 0x00000000008c981a in GateXMLDocument::GateXMLDocument(G4String const&) ()<br class=""> #12 0x00000000005f0345 in GateMaterialDatabase::ReadMaterialFromDBFile(G4String const&) ()<br class=""> #13 0x00000000005f24c3 in GateMaterialDatabase::GetMaterial(G4String const&) ()<br class=""> #14 0x00000000005825cb in GateVVolume::DefineOwnMaterials() ()<br class=""> #15 0x000000000061edc0 in GateVolumeMessenger::SetNewValue(G4UIcommand*, G4String) ()<br class=""> #16 0x00007eff564d32bb in G4UIcommand::DoIt(G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #17 0x00007eff564e06a7 in G4UImanager::ApplyCommand(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #18 0x00007eff564c5a97 in G4UIbatch::ExecCommand(G4String const&) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #19 0x00007eff564c6a2b in G4UIbatch::SessionStart() () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #20 0x00007eff564de303 in G4UImanager::ExecuteMacroFile(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #21 0x00007eff564d9648 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #22 0x00007eff564d32bb in G4UIcommand::DoIt(G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #23 0x00007eff564e06a7 in G4UImanager::ApplyCommand(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #24 0x00000000004f83fb in main ()<br class=""> ===========================================================<br class=""> <br class=""> <br class=""> The lines below might hint at the cause of the crash.<br class=""> If they do not help you then please submit a bug report at<br class=""> <a href="http://root.cern.ch/bugs" class="">http://root.cern.ch/bugs</a>. Please post the ENTIRE stack trace<br class=""> from above as an attachment in addition to anything else<br class=""> that might help us fixing this issue.<br class=""> ===========================================================<br class=""> #6 0x00000039a5529170 in __strncmp_sse42 () from /lib64/libc.so.6<br class=""> #7 0x00007eff54d5f885 in __xmlParserInputBufferCreateFilename () from /usr/lib64/libxml2.so.2<br class=""> #8 0x00007eff54d3480d in xmlNewInputFromFile () from /usr/lib64/libxml2.so.2<br class=""> #9 0x00007eff54d389f6 in xmlCreateURLParserCtxt () from /usr/lib64/libxml2.so.2<br class=""> #10 0x00007eff54d4d6ae in xmlSAXParseFileWithData () from /usr/lib64/libxml2.so.2<br class=""> #11 0x00000000008c981a in GateXMLDocument::GateXMLDocument(G4String const&) ()<br class=""> #12 0x00000000005f0345 in GateMaterialDatabase::ReadMaterialFromDBFile(G4String const&) ()<br class=""> #13 0x00000000005f24c3 in GateMaterialDatabase::GetMaterial(G4String const&) ()<br class=""> #14 0x00000000005825cb in GateVVolume::DefineOwnMaterials() ()<br class=""> #15 0x000000000061edc0 in GateVolumeMessenger::SetNewValue(G4UIcommand*, G4String) ()<br class=""> #16 0x00007eff564d32bb in G4UIcommand::DoIt(G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #17 0x00007eff564e06a7 in G4UImanager::ApplyCommand(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #18 0x00007eff564c5a97 in G4UIbatch::ExecCommand(G4String const&) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #19 0x00007eff564c6a2b in G4UIbatch::SessionStart() () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #20 0x00007eff564de303 in G4UImanager::ExecuteMacroFile(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #21 0x00007eff564d9648 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #22 0x00007eff564d32bb in G4UIcommand::DoIt(G4String) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #23 0x00007eff564e06a7 in G4UImanager::ApplyCommand(char const*) () from /home/Pedro/GEANT4/geant4.10.01-install/lib64/libG4intercoms.so<br class=""> #24 0x00000000004f83fb in main ()<br class=""> ===========================================================<br class=""> <br class=""> <br class=""> </div> </blockquote> </div> <br class=""> </div> </body> </html>