<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div style="" class="" dir="ltr" id="yui_3_16_0_1_1433855189398_8248">Hello everyone, </div><div style="" class="" id="yui_3_16_0_1_1433855189398_8398" dir="ltr">I run a simulation of the benchmarks (benchSPECT) . I want to get the spectra of energy resolution and spatial resolution . What is the command to bring the two spectra.</div><div id="yui_3_16_0_1_1433855189398_34707" dir="ltr"> Thanks </div><div style="" class="" id="yui_3_16_0_1_1433855189398_34676"> </div> <div class="qtdSeparateBR"> </div><div style="display: block;" class="yahoo_quoted"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"> Le Mardi 9 juin 2015 7h44, "gate-users-request@lists.opengatecollaboration.org" <gate-users-request@lists.opengatecollaboration.org> a écrit : </div> <div class="y_msg_container">Send Gate-users mailing list submissions to <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a ymailto="mailto:gate-users-request@lists.opengatecollaboration.org" href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a ymailto="mailto:gate-users-owner@lists.opengatecollaboration.org" href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Re: [Gate] Fix the use of IAEA phase space files (#34) (David Sarrut) 2. [OT] reCAPTCHA too difficult to resolve (Pem) ---------------------------------------------------------------------- Message: 1 Date: Tue, 9 Jun 2015 06:57:25 +0200 From: David Sarrut <<a ymailto="mailto:David.Sarrut@creatis.insa-lyon.fr" href="mailto:David.Sarrut@creatis.insa-lyon.fr">David.Sarrut@creatis.insa-lyon.fr</a>> To: gate-users <<a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>>, <a ymailto="mailto:germano.russo@i-seecomputing.com" href="mailto:germano.russo@i-seecomputing.com">germano.russo@i-seecomputing.com</a> Subject: Re: [Gate-users] [Gate] Fix the use of IAEA phase space files (#34) Message-ID: <<a ymailto="mailto:CAKTJC4DneY-VKXDmJHdUvuO5RhaqZborPPrB-B5gDm6tx0TDTQ@mail.gmail.com" href="mailto:CAKTJC4DneY-VKXDmJHdUvuO5RhaqZborPPrB-B5gDm6tx0TDTQ@mail.gmail.com">CAKTJC4DneY-VKXDmJHdUvuO5RhaqZborPPrB-B5gDm6tx0TDTQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hello Germano Russo, thank you very much for your pull-request, it has been merged (develop branch). I think a lot of users will be happy to see IAEA phase space now corrected in Gate. More details : <a href="https://github.com/OpenGATE/Gate/pull/34" target="_blank">https://github.com/OpenGATE/Gate/pull/34</a> Sincerely, David On Mon, Jun 8, 2015 at 10:32 AM, germanorusso <<a ymailto="mailto:notifications@github.com" href="mailto:notifications@github.com">notifications@github.com</a>> wrote: > I recently tried to use as source an IAEA phase space, specifically the > one named "VarianClinaciX_6MV_10x10_w1.IAEAphsp" (downloadable > from <a href="https://www-nds.iaea.org/phsp/photon1/" target="_blank">https://www-nds.iaea.org/phsp/photon1/</a>), via the > "/gate/source/[Source > name]/addPhaseSpaceFile" macro command. > > The simulation (Gate 7.0) run smoothly, however I got meaningless results. > Digging into the related Gate source code, I believe I found 3 bugs > for which I propose a correction in the 'fixIAEAphspSource' branch. > > 1) In the function 'GateSourcePhaseSpace::OpenIAEAFile()' the call > 'pIAEARecordType->initialize()' is placed after > 'pIAEAReader->getRecordContents(pIAEARecordType)'. These two lines shall be > swapped, otherwise the record contents information extracted form the IAEA > header and stored in the the object pointed by pIAEARecordType is cleared > by the initialisation operation. > > 2) The "GateIAEA > > > > *" source files appear to be based on an old C++ implementation for > handling phase spaces distributed by the IAEA. Some things seem to be > outdated, for instance in the "GateIAEAConfig.h" the definition 'typedef > long IAEA_I32' must be replaced with 'typedef int IAEA_I32' in order to > conform to the current "*.IAEAphsp" file format. > > 3) In the function 'GateSourcePhaseSpace::GenerateIAEAVertex()' the > 'pIAEARecordType->w' variable seems to be misused in the expression 'dz *= > pIAEARecordType->w'. The 'pIAEARecordType->w' variable contains the Z > direction cosine of the particle, not just its sign. So it should rather be > 'dz = pIAEARecordType->w'. Since the 'pIAEARecordType->w' variable is > slightly smaller than 1, this mistake causes small errors in the > normalisation of the momentum (and hence of the kinetic energy). > > After having applied these correction, I was able to obtain an output dose > distribution for the 10x10 cm field quite close to the experimental data > reported in the documentation distributed by IAEA along with the IAEAphsp > and IAEAheader files (" > <a href="https://www-nds.iaea.org/phsp/photon1/VarianClinaciX_6MV_PHSPdoc_Gothenburg.pdf" target="_blank">https://www-nds.iaea.org/phsp/photon1/VarianClinaciX_6MV_PHSPdoc_Gothenburg.pdf</a> > "). > > [image: comparisonpdd] > <<a href="https://cloud.githubusercontent.com/assets/8522577/8030667/fed03d40-0dc8-11e5-8a51-90eae801a36d.png" target="_blank">https://cloud.githubusercontent.com/assets/8522577/8030667/fed03d40-0dc8-11e5-8a51-90eae801a36d.png</a>> > > [image: comparisonxprofiles] > <<a href="https://cloud.githubusercontent.com/assets/8522577/8030686/28bccb3c-0dc9-11e5-9075-8756f6952043.png" target="_blank">https://cloud.githubusercontent.com/assets/8522577/8030686/28bccb3c-0dc9-11e5-9075-8756f6952043.png</a>> > > [image: comparisonyprofiles] > <<a href="https://cloud.githubusercontent.com/assets/8522577/8030692/2e0595f6-0dc9-11e5-8da2-ed4992dd8c9b.png" target="_blank">https://cloud.githubusercontent.com/assets/8522577/8030692/2e0595f6-0dc9-11e5-8da2-ed4992dd8c9b.png</a>> > ------------------------------ > You can view, comment on, or merge this pull request online at: > > <a href="https://github.com/OpenGATE/Gate/pull/34" target="_blank">https://github.com/OpenGATE/Gate/pull/34</a> > Commit Summary > > - Reversed type of IAEA_I32 to int, according with the current IAEA > setting. > - 1) In the function 'GateSourcePhaseSpace::OpenIAEAFile()' the call > > File Changes > > - *M* source/general/include/GateIAEAConfig.h > <<a href="https://github.com/OpenGATE/Gate/pull/34/files#diff-0" target="_blank">https://github.com/OpenGATE/Gate/pull/34/files#diff-0</a>> (5) > - *M* source/physics/src/GateSourcePhaseSpace.cc > <<a href="https://github.com/OpenGATE/Gate/pull/34/files#diff-1" target="_blank">https://github.com/OpenGATE/Gate/pull/34/files#diff-1</a>> (5) > > Patch Links: > > - <a href="https://github.com/OpenGATE/Gate/pull/34.patch" target="_blank">https://github.com/OpenGATE/Gate/pull/34.patch</a> > - <a href="https://github.com/OpenGATE/Gate/pull/34.diff" target="_blank">https://github.com/OpenGATE/Gate/pull/34.diff</a> > > ? > Reply to this email directly or view it on GitHub > <<a href="https://github.com/OpenGATE/Gate/pull/34" target="_blank">https://github.com/OpenGATE/Gate/pull/34</a>>. > -- David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 Centre de lutte contre le cancer L?on B?rard 28 rue La?nnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ "2 + 2 = 5, for extremely large values of 2" _________________________________ -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20150609/ddbc8d29/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20150609/ddbc8d29/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Tue, 9 Jun 2015 13:40:49 +0800 From: Pem <<a ymailto="mailto:pemryan@gmail.com" href="mailto:pemryan@gmail.com">pemryan@gmail.com</a>> To: <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> Subject: [Gate-users] [OT] reCAPTCHA too difficult to resolve Message-ID: <CAAfBEgS-pc0QdVM42is4Q1XpbqkEQi4SiQyqjke0VASaqKM+<a ymailto="mailto:VQ@mail.gmail.com" href="mailto:VQ@mail.gmail.com">VQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" hello list, I tried to register at opengatecollaboration.org <a href="http://www.opengatecollaboration.org/user/register" target="_blank">http://www.opengatecollaboration.org/user/register</a> but the reCAPTCHA failed me in more tan 10 attempts. any similar experience? 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