<html dir="ltr"> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> <style id="owaParaStyle" type="text/css">  </style> </head> <body> <div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">Hi Gate users, I just intalled Gate on my scientific Linux (gate v7.1, geant 4.10.01, root v5). When I run the SPECT example, every thing goes right but when I run the voxelized phantom source example or even a very simple geometry of my own, the program fail and give me the message below. Moreover, in my example, i don't need any materials.xml only the GateMaterials.db. I really don't understand the problem. Can anyone help me? Best regards, Gwennaëlle MARIN Medical Physics Department Jules Bordet Institute 121 Blvd de Waterloo B-1000 Brussels <a href="tel:%2B32%20%280%292%20541%2038%2005" value="+3225413805" target="_blank">+32 (0)2 541 30 0</a>2 <a href="mailto:gwennaelle.marin@bordet.be" target="_blank">gwennaelle.marin@gmail.com</a> ===== XML PATH ====: ./Materials.xml *** Break *** segmentation violation =========================================================== There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x0000003fa88ac61e in waitpid () from /lib64/libc.so.6 #1 0x0000003fa883e609 in do_system () from /lib64/libc.so.6 #2 0x00007f15b429f388 in TUnixSystem::StackTrace() () from /opt/simulation/root_v5/root/lib/libCore.so #3 0x00007f15b429e203 in TUnixSystem::DispatchSignals(ESignals) () from /opt/simulation/root_v5/root/lib/libCore.so #4 <signal handler called> #5 0x0000003fa8938830 in __strncmp_ssse3 () from /lib64/libc.so.6 #6 0x0000003fb285e885 in __xmlParserInputBufferCreateFilename () from /usr/lib64/libxml2.so.2 #7 0x0000003fb283380d in xmlNewInputFromFile () from /usr/lib64/libxml2.so.2 #8 0x0000003fb28379f6 in xmlCreateURLParserCtxt () from /usr/lib64/libxml2.so.2 #9 0x0000003fb284c6ae in xmlSAXParseFileWithData () from /usr/lib64/libxml2.so.2 #10 0x000000000089d070 in GateXMLDocument::GateXMLDocument(G4String const&) () #11 0x00000000005bc149 in GateMaterialDatabase::ReadMaterialFromDBFile(G4String const&) () #12 0x00000000005be16b in GateMaterialDatabase::GetMaterial(G4String const&) () #13 0x000000000055e4f8 in GateVVolume::DefineOwnMaterials() () #14 0x00000000005751a0 in GateVolumeMessenger::SetNewValue(G4UIcommand*, G4String) () #15 0x00007f15b50ca2cb in G4UIcommand::DoIt(G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #16 0x00007f15b50d76b7 in G4UImanager::ApplyCommand(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #17 0x00007f15b50bcaa7 in G4UIbatch::ExecCommand(G4String const&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #18 0x00007f15b50bda3b in G4UIbatch::SessionStart() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #19 0x00007f15b50d5313 in G4UImanager::ExecuteMacroFile(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #20 0x00007f15b50d0658 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #21 0x00007f15b50ca2cb in G4UIcommand::DoIt(G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #22 0x00007f15b50d76b7 in G4UImanager::ApplyCommand(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #23 0x00007f15b936550d in G4VBasicShell::ExecuteCommand(G4String const&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #24 0x00007f15b936691d in G4VBasicShell::ApplyShellCommand(G4String const&, bool&, bool&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #25 0x00007f15b935246b in G4UIQt::CommandEnteredCallback() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #26 0x00007f15b9360f66 in G4UIQt::qt_metacall(QMetaObject::Call, int, void**) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #27 0x0000003fb396a7df in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib64/libQtCore.so.4 #28 0x0000003fb817f6b8 in QLineEdit::qt_metacall(QMetaObject::Call, int, void**) () from /usr/lib64/libQtGui.so.4 #29 0x0000003fb396a7df in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib64/libQtCore.so.4 #30 0x0000003fb8186f4c in QLineControl::processKeyEvent(QKeyEvent*) () from /usr/lib64/libQtGui.so.4 #31 0x0000003fb817c6b1 in QLineEdit::keyPressEvent(QKeyEvent*) () from /usr/lib64/libQtGui.so.4 #32 0x0000003fb7df5936 in QWidget::event(QEvent*) () from /usr/lib64/libQtGui.so.4 #33 0x0000003fb817d801 in QLineEdit::event(QEvent*) () from /usr/lib64/libQtGui.so.4 #34 0x0000003fb7daaa0c in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /usr/lib64/libQtGui.so.4 #35 0x0000003fb7db211f in QApplication::notify(QObject*, QEvent*) () from /usr/lib64/libQtGui.so.4 #36 0x0000003fb3957d0c in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /usr/lib64/libQtCore.so.4 #37 0x0000003fb7e44a4a in ?? () from /usr/lib64/libQtGui.so.4 #38 0x0000003fb7e46e80 in ?? () from /usr/lib64/libQtGui.so.4 #39 0x0000003fb7e20d6a in QApplication::x11ProcessEvent(_XEvent*) () from /usr/lib64/libQtGui.so.4 #40 0x0000003fb7e49e92 in ?? () from /usr/lib64/libQtGui.so.4 #41 0x0000003faa040642 in g_main_context_dispatch () from /lib64/libglib-2.0.so.0 #42 0x0000003faa044c98 in ?? () from /lib64/libglib-2.0.so.0 #43 0x0000003faa044e4c in g_main_context_iteration () from /lib64/libglib-2.0.so.0 #44 0x0000003fb397d613 in QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #45 0x0000003fb7e49b5e in ?? () from /usr/lib64/libQtGui.so.4 #46 0x0000003fb3956752 in QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #47 0x0000003fb3956a1c in QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #48 0x0000003fb3958d09 in QCoreApplication::exec() () from /usr/lib64/libQtCore.so.4 #49 0x00007f15b93456c2 in G4UIQt::SessionStart() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #50 0x00000000004f26d6 in main () =========================================================== The lines below might hint at the cause of the crash. If they do not help you then please submit a bug report at http://root.cern.ch/bugs. Please post the ENTIRE stack trace from above as an attachment in addition to anything else that might help us fixing this issue. =========================================================== #5 0x0000003fa8938830 in __strncmp_ssse3 () from /lib64/libc.so.6 #6 0x0000003fb285e885 in __xmlParserInputBufferCreateFilename () from /usr/lib64/libxml2.so.2 #7 0x0000003fb283380d in xmlNewInputFromFile () from /usr/lib64/libxml2.so.2 #8 0x0000003fb28379f6 in xmlCreateURLParserCtxt () from /usr/lib64/libxml2.so.2 #9 0x0000003fb284c6ae in xmlSAXParseFileWithData () from /usr/lib64/libxml2.so.2 #10 0x000000000089d070 in GateXMLDocument::GateXMLDocument(G4String const&) () #11 0x00000000005bc149 in GateMaterialDatabase::ReadMaterialFromDBFile(G4String const&) () #12 0x00000000005be16b in GateMaterialDatabase::GetMaterial(G4String const&) () #13 0x000000000055e4f8 in GateVVolume::DefineOwnMaterials() () #14 0x00000000005751a0 in GateVolumeMessenger::SetNewValue(G4UIcommand*, G4String) () #15 0x00007f15b50ca2cb in G4UIcommand::DoIt(G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #16 0x00007f15b50d76b7 in G4UImanager::ApplyCommand(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #17 0x00007f15b50bcaa7 in G4UIbatch::ExecCommand(G4String const&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #18 0x00007f15b50bda3b in G4UIbatch::SessionStart() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #19 0x00007f15b50d5313 in G4UImanager::ExecuteMacroFile(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #20 0x00007f15b50d0658 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #21 0x00007f15b50ca2cb in G4UIcommand::DoIt(G4String) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #22 0x00007f15b50d76b7 in G4UImanager::ApplyCommand(char const*) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4intercoms.so #23 0x00007f15b936550d in G4VBasicShell::ExecuteCommand(G4String const&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #24 0x00007f15b936691d in G4VBasicShell::ApplyShellCommand(G4String const&, bool&, bool&) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #25 0x00007f15b935246b in G4UIQt::CommandEnteredCallback() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #26 0x00007f15b9360f66 in G4UIQt::qt_metacall(QMetaObject::Call, int, void**) () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #27 0x0000003fb396a7df in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib64/libQtCore.so.4 #28 0x0000003fb817f6b8 in QLineEdit::qt_metacall(QMetaObject::Call, int, void**) () from /usr/lib64/libQtGui.so.4 #29 0x0000003fb396a7df in QMetaObject::activate(QObject*, QMetaObject const*, int, void**) () from /usr/lib64/libQtCore.so.4 #30 0x0000003fb8186f4c in QLineControl::processKeyEvent(QKeyEvent*) () from /usr/lib64/libQtGui.so.4 #31 0x0000003fb817c6b1 in QLineEdit::keyPressEvent(QKeyEvent*) () from /usr/lib64/libQtGui.so.4 #32 0x0000003fb7df5936 in QWidget::event(QEvent*) () from /usr/lib64/libQtGui.so.4 #33 0x0000003fb817d801 in QLineEdit::event(QEvent*) () from /usr/lib64/libQtGui.so.4 #34 0x0000003fb7daaa0c in QApplicationPrivate::notify_helper(QObject*, QEvent*) () from /usr/lib64/libQtGui.so.4 #35 0x0000003fb7db211f in QApplication::notify(QObject*, QEvent*) () from /usr/lib64/libQtGui.so.4 #36 0x0000003fb3957d0c in QCoreApplication::notifyInternal(QObject*, QEvent*) () from /usr/lib64/libQtCore.so.4 #37 0x0000003fb7e44a4a in ?? () from /usr/lib64/libQtGui.so.4 #38 0x0000003fb7e46e80 in ?? () from /usr/lib64/libQtGui.so.4 #39 0x0000003fb7e20d6a in QApplication::x11ProcessEvent(_XEvent*) () from /usr/lib64/libQtGui.so.4 #40 0x0000003fb7e49e92 in ?? () from /usr/lib64/libQtGui.so.4 #41 0x0000003faa040642 in g_main_context_dispatch () from /lib64/libglib-2.0.so.0 #42 0x0000003faa044c98 in ?? () from /lib64/libglib-2.0.so.0 #43 0x0000003faa044e4c in g_main_context_iteration () from /lib64/libglib-2.0.so.0 #44 0x0000003fb397d613 in QEventDispatcherGlib::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #45 0x0000003fb7e49b5e in ?? () from /usr/lib64/libQtGui.so.4 #46 0x0000003fb3956752 in QEventLoop::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #47 0x0000003fb3956a1c in QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) () from /usr/lib64/libQtCore.so.4 #48 0x0000003fb3958d09 in QCoreApplication::exec() () from /usr/lib64/libQtCore.so.4 #49 0x00007f15b93456c2 in G4UIQt::SessionStart() () from /opt/simulation/geant4.10.01/geant4.10.01-install/lib64/libG4interfaces.so #50 0x00000000004f26d6 in main () =========================================================== Segmentation fault <div> <div style="font-family:Tahoma; font-size:13px"> <div style="font-family:Tahoma; font-size:13px"> <div>Gwennaëlle MARIN Medical Physics Department Jules Bordet Institute 121 Blvd de Waterloo B-1000 Brussels <a href="tel:%2B32%20%280%292%20541%2038%2005" value="+3225413805" target="_blank">+32 (0)2 541 30 0</a>2 <a href="mailto:gwennaelle.marin@bordet.be" target="_blank">gwennaelle.marin@gmail.com</a> </div> </div> </div> </div> </div> Disclaimer : http://www.bordet.be/disclaimer/disclaimer.html </body> </html>