<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_1_1429031325141_2647" dir="ltr"><span>Please don't send me your mails in future</span></div><div id="yui_3_16_0_1_1429031325141_2647" dir="ltr"><br></div> <br><div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"> <font size="2" face="Arial"> Le Mardi 14 avril 2015 17h19, "gate-users-request@lists.opengatecollaboration.org" <gate-users-request@lists.opengatecollaboration.org> a écrit :<br> </font> </div> <br><br> <div class="y_msg_container">Send Gate-users mailing list submissions to<br> <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br><br>To subscribe or unsubscribe via the World Wide Web, visit<br> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>or, via email, send a message with subject or body 'help' to<br> <a ymailto="mailto:gate-users-request@lists.opengatecollaboration.org" href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a><br><br>You can reach the person managing the list at<br> <a ymailto="mailto:gate-users-owner@lists.opengatecollaboration.org" href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a><br><br>When replying, please edit your Subject line so it is more specific<br>than "Re: Contents of Gate-users digest..."<br><br><br>Today's Topics:<br><br> 1. Re: ion source timestamp bug, Gate 7.1 (Gergely Patay)<br> 2. Re: Gate 7.1 build broken after updating to Geant4.10.01.p01<br> (Alex Vergara Gil)<br> 3. Re: Gate 7.1 build broken after updating to Geant4.10.01.p01<br> (Marc Verderi)<br> 4. Geant4 and Eclipse (imen elhamrouni)<br> 5. Re: Root not working in VGate 3.0 (Mathieu DUPONT)<br><br><br>----------------------------------------------------------------------<br><br>Message: 1<br>Date: Tue, 14 Apr 2015 15:13:32 +0200<br>From: Gergely Patay <<a ymailto="mailto:gergely.patay@mediso.com" href="mailto:gergely.patay@mediso.com">gergely.patay@mediso.com</a>><br>To: Gate User <<a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>><br>Subject: Re: [Gate-users] ion source timestamp bug, Gate 7.1<br>Message-ID: <<a ymailto="mailto:552D127C.7040800@mediso.com" href="mailto:552D127C.7040800@mediso.com">552D127C.7040800@mediso.com</a>><br>Content-Type: text/plain; charset="utf-8"; format=flowed<br><br>Dear Gaters,<br><br>to answer my own question: the problem is indeed deep inside Geant4, and as <br>usual, originally this is "not a bug, but a feature".<br><br>In GateVSource.cc:268 we (try to) force life time of the source particle to zero:<br>// Force life time to 0, time is managed by GATE not G4<br>GetParticleDefinition()->SetPDGLifeTime(0);<br><br>However, from v10.0+ when Geant4 reads back the life time of a general ion <br>source, it does *not* retrieve the previously set value, but an (otherwise <br>physically correct) value from an external data file <br>(G4ENSDFSTATE1.0/ENSDFSTATE.dat) :<br><br>G4ParticleDefinition.icc:45<br>inline<br> G4double G4ParticleDefinition::GetPDGLifeTime() const<br>{<br> if(IsGeneralIon())<br> { return GetIonLifeTime(); }<br> else<br> { return thePDGLifeTime; }<br>}<br><br>Unfortunately, the underlying isGeneralIon variable is not directly accessible <br>from outside (i.e. from Gate).<br><br>A minimal workaround might be as follows:<br><br>1) change visibility of isGeneralIon from protected to public:<br>geant4/particles/management/include/G4ParticleDefinition.hh:402<br>- protected:<br>+ public:<br> G4bool isGeneralIon;<br><br>(this might be modified *without* recompiling Geant4)<br><br>2) add the following line to gate/source/physics/src/GateVSource.cc:269<br> GetParticleDefinition()->SetPDGLifeTime(0);<br>+ GetParticleDefinition()->isGeneralIon=false;<br><br>3) recompile Gate with the modified header file.<br><br>Since this modification affects Geant4 code too, I cannot provide a simple patch <br>file yet.<br><br>best regards,<br> Gergely<br><br> --<br>Gergely Patay<br>Mediso Ltd.<br><br><br><br>On 2015-04-01 13:38, Gergely Patay wrote:<br>> Dear Gaters,<br>><br>> I installed the latest version of Gate from git. Everything went fine<br>> (benchmarks etc), until I tried to use the 'generic ion' source for a PET<br>> simulation.<br>><br>> The timestamps of the hits (and consequently, of the singles and coincidences)<br>> are weird. They should be distributed uniformly in the [0,1] s interval (as seen<br>> on the ion_timestamp_gate7.0.png figure), but in 7.1 they are distributed<br>> exponentially over a much-much larger time interval with an exponent which<br>> equals to the decay rate of the ion, in this case Na-22.<br>><br>> The macro files were identical, and the corresponding software versions were<br>> - Gate7.0, Geant4.9.6.p03, root5.34.18<br>> - Gate7.1, Geant4.10.01, root5.34.26<br>><br>> This bug is actually the very same to that was reported on March 31, 2011 for<br>> Gate 6.0.1<br>> (<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/2011-March/004895.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/2011-March/004895.html</a>)<br>> which somehow disappeared from 7.0 but re-emerged in 7.1.<br>><br>> The bug does not affect the backtoback or e+ sources, and energy spectra are fine.<br>> It might be buried somewhere deep in Geant4.<br>><br>> Do you have any idea what went wrong?<br>><br>> thanks,<br>> Gergely<br>><br>> --<br>> Gergely Patay<br>> Mediso Ltd.<br>><br>><br>> _______________________________________________<br>> Gate-users mailing list<br>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>><br><br><br>------------------------------<br><br>Message: 2<br>Date: Tue, 14 Apr 2015 09:16:01 -0400<br>From: Alex Vergara Gil <<a ymailto="mailto:alexvergaragil@gmail.com" href="mailto:alexvergaragil@gmail.com">alexvergaragil@gmail.com</a>><br>To: REUZE SYLVAIN <<a ymailto="mailto:SYLVAIN.REUZE@gustaveroussy.fr" href="mailto:SYLVAIN.REUZE@gustaveroussy.fr">SYLVAIN.REUZE@gustaveroussy.fr</a>><br>Cc: Gate Users <<a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>><br>Subject: Re: [Gate-users] Gate 7.1 build broken after updating to<br> Geant4.10.01.p01<br>Message-ID:<br> <CAMF2x=nDWVfRCzt5sn0RuhkwBpEme594sZpB70+<a ymailto="mailto:Z_N5pbjtO4Q@mail.gmail.com" href="mailto:Z_N5pbjtO4Q@mail.gmail.com">Z_N5pbjtO4Q@mail.gmail.com</a>><br>Content-Type: text/plain; charset=UTF-8<br><br>Indeed! In the G4 page there is no link to the source code of 10.1<br>version without the patch01.<br><br>This is dangerous for Gate, shall it be created a mirror image of the<br>current working G4 source code in the<br><a href="http://www.opengatecollaboration.org/" target="_blank">http://www.opengatecollaboration.org </a>page??? I think this would be a<br>temporary solution at least for now.<br><br>Regards<br>Alex<br><br><br>2015-04-14 9:06 GMT-04:00, REUZE SYLVAIN <<a ymailto="mailto:SYLVAIN.REUZE@gustaveroussy.fr" href="mailto:SYLVAIN.REUZE@gustaveroussy.fr">SYLVAIN.REUZE@gustaveroussy.fr</a>>:<br>> Hello,<br>><br>><br>><br>> I have the same compilation errors with Geant4 10.01 p01. I'd like to<br>> install Gate 7.1 in order to solve another problem, but I can't find the<br>> link to download Geant4 10.01, without the patch.<br>><br>> Could you help me ?<br>><br>><br>><br>> Best regards,<br>><br>> Sylvain Reuz?<br>> Stagiaire physicien<br>> D?partement de Radioth?rapie<br>> Service de physique m?dicale<br>><br>> T?l. : 01 42 11 54 06<br>> www.gustaveroussy.fr<<a href="http://www.gustaveroussy.fr/" target="_blank">http://www.gustaveroussy.fr</a>><br>> [cid:<a ymailto="mailto:image001.gif@01D076C4.8D1D9C60" href="mailto:image001.gif@01D076C4.8D1D9C60">image001.gif@01D076C4.8D1D9C60</a>]<br>><br>><br>><br>><br>><br>><br>><br>> -----Message d'origine-----<br>> De : <a ymailto="mailto:gate-users-bounces@lists.opengatecollaboration.org" href="mailto:gate-users-bounces@lists.opengatecollaboration.org">gate-users-bounces@lists.opengatecollaboration.org</a><br>> [mailto:<a ymailto="mailto:gate-users-bounces@lists.opengatecollaboration.org" href="mailto:gate-users-bounces@lists.opengatecollaboration.org">gate-users-bounces@lists.opengatecollaboration.org</a>] De la part de<br>> Alex Vergara Gil<br>> Envoy? : lundi 13 avril 2015 13:12<br>> ? : Marc Chamberland<br>> Cc : Gate Users<br>> Objet : Re: [Gate-users] Gate 7.1 build broken after updating to<br>> Geant4.10.01.p01<br>><br>><br>><br>> For what it's worth, I can reproduce the compilation errors, too.<br>><br>> There might be a compatibility issue with the<br>><br>> G4SPSRandomGenerator.hh:156:7:<br>><br>> error: field of type 'G4Cache<G4SPSRandomGenerator::a_check>' has<br>><br>> private copy constructor<br>><br>> class G4SPSRandomGenerator {<br>><br>><br>><br>> I'm compiling with:<br>><br>><br>><br>> GCC version 4.8<br>><br>><br>><br>> Alex<br>><br>><br>><br>> 2015-04-10 11:53 GMT-04:00, Marc Chamberland<br>><br>> <<a ymailto="mailto:MarcChamberland@cmail.carleton.ca" href="mailto:MarcChamberland@cmail.carleton.ca">MarcChamberland@cmail.carleton.ca</a>>:<br>><br>>> For what it's worth, I can reproduce the compilation errors, too. I'm<br>><br>>> compiling with:<br>><br>>><br>><br>>> Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn)<br>><br>>><br>><br>>><br>><br>>> Marc<br>><br>>><br>><br>>><br>><br>>><br>><br>>> __________________________<br>><br>>><br>><br>>> Marc Chamberland, MSc<br>><br>>> PhD candidate<br>><br>>> Department of Physics<br>><br>>> Carleton University<br>><br>>> Ottawa (ON)<br>><br>>><br>><br>>>> On Apr 9, 2015, at 17:17, Mojca Miklavec<br>>>> <<a ymailto="mailto:mojca.miklavec.lists@gmail.com" href="mailto:mojca.miklavec.lists@gmail.com">mojca.miklavec.lists@gmail.com</a>><br>><br>>>> wrote:<br>><br>>>><br>><br>>>> Hi,<br>><br>>>><br>><br>>>> Today I updated Geant4 from version 4.10.01 to 4.10.01.p01 and Gate no<br>><br>>>> longer compiles for me. Below is the first error (followed by many<br>><br>>>> others). I was surprised because Geant4 developers aren't really known<br>><br>>>> for breaking backward compatibility with patch releases.<br>><br>>>><br>><br>>>> I'm using clang 3.4 which is not fully C++11 compatible (at least not<br>><br>>>> without switching to a different stdlib) in case that this was the<br>><br>>>> reason for the failure.<br>><br>>>><br>><br>>>> I will try to investigate where the problem could be, but I wanted to<br>><br>>>> report an issue. Maybe others will be able to reproduce it and<br>><br>>>> diagnose it faster than I can. (There is a chance that it's not<br>><br>>>> related to the code in Gate and that Geant4 is to blame.)<br>><br>>>><br>><br>>>> Mojca<br>><br>>>><br>><br>>>><br>><br>>>><br>><br>>>> [ 87%] Building CXX object<br>><br>>>> CMakeFiles/Gate.dir/source/physics/src/GateVSourceMessenger.cc.o<br>><br>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++<br>><br>>>> -DG4INTY_USE_QT -DG4UI_USE -DG4UI_USE_QT -DG4UI_USE_TCSH -DG4VERBOSE<br>><br>>>> -DG4VIS_USE -DG4VIS_USE_OPENGL -DG4VIS_USE_OPENGLQT<br>><br>>>> -DG4_STORE_TRAJECTORY -pipe -Os -arch x86_64 -stdlib=libstdc++ -W<br>><br>>>> -Wall -pedantic -Wno-non-virtual-dtor -Wno-long-long -Wwrite-strings<br>><br>>>> -Wpointer-arith -Woverloaded-virtual -Wno-variadic-macros -Wshadow<br>><br>>>> -pipe -Qunused-arguments -std=c++98 -pipe -Os -arch x86_64<br>><br>>>> -stdlib=libstdc++ -Wno-shadow -DNDEBUG -DNDEBUG -arch x86_64<br>><br>>>> -mmacosx-version-min=10.7 -F//System/Library/Frameworks<br>><br>>>> -I/opt/local/libexec/root5/include/root -I/path/to/build -isystem<br>><br>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4 -isystem<br>><br>>>> /opt/local/include -isystem /opt/local/include/QtCore -isystem<br>><br>>>> /opt/local/include/QtGui -isystem /opt/local/include/QtOpenGL<br>><br>>>> -I/path/to/Gate-a20d5f0/source/arf/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/geometry/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/physics/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/digits_hits/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/general/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/externals/clhep/include<br>><br>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd<br>><br>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd/itkzlib<br>><br>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd/MetaIO<br>><br>>>> -I/path/to/build/itk-mhd -o<br>><br>>>> CMakeFiles/Gate.dir/source/physics/src/GateVSourceMessenger.cc.o -c<br>><br>>>> /path/to/Gate-a20d5f0/source/physics/src/GateVSourceMessenger.cc<br>><br>>>> In file included from<br>><br>>>> /path/to/Gate-a20d5f0/source/physics/src/GateVSource.cc:16:<br>><br>>>> In file included from<br>><br>>>> /path/to/Gate-a20d5f0/source/physics/include/GateBackToBack.hh:14:<br>><br>>>> In file included from<br>><br>>>> /path/to/Gate-a20d5f0/source/physics/include/GateVSource.hh:16:<br>><br>>>> In file included from<br>><br>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SingleParticleSource.hh:124:<br>><br>>>> In file included from<br>><br>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SPSPosDistribution.hh:141:<br>><br>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SPSRandomGenerator.hh:156:7:<br>><br>>>> error: field of type 'G4Cache<G4SPSRandomGenerator::a_check>' has<br>><br>>>> private copy constructor<br>><br>>>> class G4SPSRandomGenerator {<br>><br>>>> ^<br>><br>>>> _______________________________________________<br>><br>>>> Gate-users mailing list<br>><br>>>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>><br>>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>><br>>><br>><br>>> _______________________________________________<br>><br>>> Gate-users mailing list<br>><br>>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>><br>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>><br>> _______________________________________________<br>><br>> Gate-users mailing list<br>><br>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>><br>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>><br><br><br>------------------------------<br><br>Message: 3<br>Date: Tue, 14 Apr 2015 15:21:17 +0200<br>From: Marc Verderi <<a ymailto="mailto:verderi@in2p3.fr" href="mailto:verderi@in2p3.fr">verderi@in2p3.fr</a>><br>To: <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>Subject: Re: [Gate-users] Gate 7.1 build broken after updating to<br> Geant4.10.01.p01<br>Message-ID: <<a ymailto="mailto:552D144D.5050808@in2p3.fr" href="mailto:552D144D.5050808@in2p3.fr">552D144D.5050808@in2p3.fr</a>><br>Content-Type: text/plain; charset=utf-8; format=flowed<br><br>Dear all,<br><br>Andrea Dotti <<a ymailto="mailto:adotti@slac.stanford.edu" href="mailto:adotti@slac.stanford.edu">adotti@slac.stanford.edu</a>>, from Geant4, has been informed <br>of the problem. Could involved Gate developers contact him for providing <br>a solution ?<br><br>Cheers,<br>Marc<br><br><br>On 04/14/2015 03:16 PM, Alex Vergara Gil wrote:<br>> Indeed! In the G4 page there is no link to the source code of 10.1<br>> version without the patch01.<br>><br>> This is dangerous for Gate, shall it be created a mirror image of the<br>> current working G4 source code in the<br>> <a href="http://www.opengatecollaboration.org/" target="_blank">http://www.opengatecollaboration.org </a>page??? I think this would be a<br>> temporary solution at least for now.<br>><br>> Regards<br>> Alex<br>><br>><br>> 2015-04-14 9:06 GMT-04:00, REUZE SYLVAIN <<a ymailto="mailto:SYLVAIN.REUZE@gustaveroussy.fr" href="mailto:SYLVAIN.REUZE@gustaveroussy.fr">SYLVAIN.REUZE@gustaveroussy.fr</a>>:<br>>> Hello,<br>>><br>>><br>>><br>>> I have the same compilation errors with Geant4 10.01 p01. I'd like to<br>>> install Gate 7.1 in order to solve another problem, but I can't find the<br>>> link to download Geant4 10.01, without the patch.<br>>><br>>> Could you help me ?<br>>><br>>><br>>><br>>> Best regards,<br>>><br>>> Sylvain Reuz?<br>>> Stagiaire physicien<br>>> D?partement de Radioth?rapie<br>>> Service de physique m?dicale<br>>><br>>> T?l. : 01 42 11 54 06<br>>> www.gustaveroussy.fr<<a href="http://www.gustaveroussy.fr/" target="_blank">http://www.gustaveroussy.fr</a>><br>>> [cid:<a ymailto="mailto:image001.gif@01D076C4.8D1D9C60" href="mailto:image001.gif@01D076C4.8D1D9C60">image001.gif@01D076C4.8D1D9C60</a>]<br>>><br>>><br>>><br>>><br>>><br>>><br>>><br>>> -----Message d'origine-----<br>>> De : <a ymailto="mailto:gate-users-bounces@lists.opengatecollaboration.org" href="mailto:gate-users-bounces@lists.opengatecollaboration.org">gate-users-bounces@lists.opengatecollaboration.org</a><br>>> [mailto:<a ymailto="mailto:gate-users-bounces@lists.opengatecollaboration.org" href="mailto:gate-users-bounces@lists.opengatecollaboration.org">gate-users-bounces@lists.opengatecollaboration.org</a>] De la part de<br>>> Alex Vergara Gil<br>>> Envoy? : lundi 13 avril 2015 13:12<br>>> ? : Marc Chamberland<br>>> Cc : Gate Users<br>>> Objet : Re: [Gate-users] Gate 7.1 build broken after updating to<br>>> Geant4.10.01.p01<br>>><br>>><br>>><br>>> For what it's worth, I can reproduce the compilation errors, too.<br>>><br>>> There might be a compatibility issue with the<br>>><br>>> G4SPSRandomGenerator.hh:156:7:<br>>><br>>> error: field of type 'G4Cache<G4SPSRandomGenerator::a_check>' has<br>>><br>>> private copy constructor<br>>><br>>> class G4SPSRandomGenerator {<br>>><br>>><br>>><br>>> I'm compiling with:<br>>><br>>><br>>><br>>> GCC version 4.8<br>>><br>>><br>>><br>>> Alex<br>>><br>>><br>>><br>>> 2015-04-10 11:53 GMT-04:00, Marc Chamberland<br>>><br>>> <<a ymailto="mailto:MarcChamberland@cmail.carleton.ca" href="mailto:MarcChamberland@cmail.carleton.ca">MarcChamberland@cmail.carleton.ca</a>>:<br>>><br>>>> For what it's worth, I can reproduce the compilation errors, too. I'm<br>>>> compiling with:<br>>>> Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn)<br>>>> Marc<br>>>> __________________________<br>>>> Marc Chamberland, MSc<br>>>> PhD candidate<br>>>> Department of Physics<br>>>> Carleton University<br>>>> Ottawa (ON)<br>>>>> On Apr 9, 2015, at 17:17, Mojca Miklavec<br>>>>> <<a ymailto="mailto:mojca.miklavec.lists@gmail.com" href="mailto:mojca.miklavec.lists@gmail.com">mojca.miklavec.lists@gmail.com</a>><br>>>>> wrote:<br>>>>> Hi,<br>>>>> Today I updated Geant4 from version 4.10.01 to 4.10.01.p01 and Gate no<br>>>>> longer compiles for me. Below is the first error (followed by many<br>>>>> others). I was surprised because Geant4 developers aren't really known<br>>>>> for breaking backward compatibility with patch releases.<br>>>>> I'm using clang 3.4 which is not fully C++11 compatible (at least not<br>>>>> without switching to a different stdlib) in case that this was the<br>>>>> reason for the failure.<br>>>>> I will try to investigate where the problem could be, but I wanted to<br>>>>> report an issue. Maybe others will be able to reproduce it and<br>>>>> diagnose it faster than I can. (There is a chance that it's not<br>>>>> related to the code in Gate and that Geant4 is to blame.)<br>>>>> Mojca<br>>>>> [ 87%] Building CXX object<br>>>>> CMakeFiles/Gate.dir/source/physics/src/GateVSourceMessenger.cc.o<br>>>>> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++<br>>>>> -DG4INTY_USE_QT -DG4UI_USE -DG4UI_USE_QT -DG4UI_USE_TCSH -DG4VERBOSE<br>>>>> -DG4VIS_USE -DG4VIS_USE_OPENGL -DG4VIS_USE_OPENGLQT<br>>>>> -DG4_STORE_TRAJECTORY -pipe -Os -arch x86_64 -stdlib=libstdc++ -W<br>>>>> -Wall -pedantic -Wno-non-virtual-dtor -Wno-long-long -Wwrite-strings<br>>>>> -Wpointer-arith -Woverloaded-virtual -Wno-variadic-macros -Wshadow<br>>>>> -pipe -Qunused-arguments -std=c++98 -pipe -Os -arch x86_64<br>>>>> -stdlib=libstdc++ -Wno-shadow -DNDEBUG -DNDEBUG -arch x86_64<br>>>>> -mmacosx-version-min=10.7 -F//System/Library/Frameworks<br>>>>> -I/opt/local/libexec/root5/include/root -I/path/to/build -isystem<br>>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4 -isystem<br>>>>> /opt/local/include -isystem /opt/local/include/QtCore -isystem<br>>>>> /opt/local/include/QtGui -isystem /opt/local/include/QtOpenGL<br>>>>> -I/path/to/Gate-a20d5f0/source/arf/include<br>>>>> -I/path/to/Gate-a20d5f0/source/geometry/include<br>>>>> -I/path/to/Gate-a20d5f0/source/physics/include<br>>>>> -I/path/to/Gate-a20d5f0/source/digits_hits/include<br>>>>> -I/path/to/Gate-a20d5f0/source/general/include<br>>>>> -I/path/to/Gate-a20d5f0/source/externals/clhep/include<br>>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd<br>>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd/itkzlib<br>>>>> -I/path/to/Gate-a20d5f0/source/externals/itk-mhd/MetaIO<br>>>>> -I/path/to/build/itk-mhd -o<br>>>>> CMakeFiles/Gate.dir/source/physics/src/GateVSourceMessenger.cc.o -c<br>>>>> /path/to/Gate-a20d5f0/source/physics/src/GateVSourceMessenger.cc<br>>>>> In file included from<br>>>>> /path/to/Gate-a20d5f0/source/physics/src/GateVSource.cc:16:<br>>>>> In file included from<br>>>>> /path/to/Gate-a20d5f0/source/physics/include/GateBackToBack.hh:14:<br>>>>> In file included from<br>>>>> /path/to/Gate-a20d5f0/source/physics/include/GateVSource.hh:16:<br>>>>> In file included from<br>>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SingleParticleSource.hh:124:<br>>>>> In file included from<br>>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SPSPosDistribution.hh:141:<br>>>>> /opt/local/include/Geant4/Geant4.10.1/Geant4/G4SPSRandomGenerator.hh:156:7:<br>>>>> error: field of type 'G4Cache<G4SPSRandomGenerator::a_check>' has<br>>>>> private copy constructor<br>>>>> class G4SPSRandomGenerator {<br>>>>> ^<br>>>>> _______________________________________________<br>>>>> Gate-users mailing list<br>>>>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>>>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>>>> _______________________________________________<br>>>> Gate-users mailing list<br>>>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>>> _______________________________________________<br>>><br>>> Gate-users mailing list<br>>><br>>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>>><br>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>>><br>> _______________________________________________<br>> Gate-users mailing list<br>> <a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br><br><br><br>------------------------------<br><br>Message: 4<br>Date: Tue, 14 Apr 2015 16:47:15 +0200<br>From: imen elhamrouni <<a ymailto="mailto:imenelhamrouni@gmail.com" href="mailto:imenelhamrouni@gmail.com">imenelhamrouni@gmail.com</a>><br>To: <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>Subject: [Gate-users] Geant4 and Eclipse<br>Message-ID:<br> <<a ymailto="mailto:CAMaL-We2FxJYTeK_jYhpLu3F9cw9Qm5HQA_sGfohhLs-yscG5g@mail.gmail.com" href="mailto:CAMaL-We2FxJYTeK_jYhpLu3F9cw9Qm5HQA_sGfohhLs-yscG5g@mail.gmail.com">CAMaL-We2FxJYTeK_jYhpLu3F9cw9Qm5HQA_sGfohhLs-yscG5g@mail.gmail.com</a>><br>Content-Type: text/plain; charset="utf-8"<br><br>Hello all,<br><br>Is There any way to run an example of Geant4 ,B1 for example, from a new<br>project in eclipse , which are the libraries i should add to this<br> project? Is there any specific configuration for eclipse?What should i do<br>?..<br><br>Thanks!<br>Imen<br>?<br>-------------- next part --------------<br>An HTML attachment was scrubbed...<br>URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20150414/699be61a/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20150414/699be61a/attachment-0001.html</a>><br><br>------------------------------<br><br>Message: 5<br>Date: Tue, 14 Apr 2015 18:19:09 +0200 (CEST)<br>From: Mathieu DUPONT <<a ymailto="mailto:mdupont@cppm.in2p3.fr" href="mailto:mdupont@cppm.in2p3.fr">mdupont@cppm.in2p3.fr</a>><br>To: BERGAMASCHI Antoine <<a ymailto="mailto:antoine.bergamaschi@synchrotron-soleil.fr" href="mailto:antoine.bergamaschi@synchrotron-soleil.fr">antoine.bergamaschi@synchrotron-soleil.fr</a>><br>Cc: <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>Subject: Re: [Gate-users] Root not working in VGate 3.0<br>Message-ID:<br> <<a ymailto="mailto:1799207786.5910617.1429028349637.JavaMail.zimbra@cppm.in2p3.fr" href="mailto:1799207786.5910617.1429028349637.JavaMail.zimbra@cppm.in2p3.fr">1799207786.5910617.1429028349637.JavaMail.zimbra@cppm.in2p3.fr</a>><br>Content-Type: text/plain; charset=utf-8<br><br>Hi Antoine, <br><br>you are right. It's not working. <br><br>For the libjpeg missing, simply do : <br><br>sudo apt-get install libjpeg62<br><br>And after that, you will miss some ?libtiff stuff?. <br><br>To fix this, I did <br><br>sudo apt-get install libtiff4<br>sudo ln -s /usr/lib/x86_64-linux-gnu/libtiff.so.4 /usr/lib/libtiff.so.3<br><br>And it's working now (at least, the Draw() command in root). It's not a clean solution, but I hope it will help you. <br><br><br>Mathieu Dupont<br><br><br><br>----- Original Message -----<br>From: "BERGAMASCHI Antoine" <<a ymailto="mailto:antoine.bergamaschi@synchrotron-soleil.fr" href="mailto:antoine.bergamaschi@synchrotron-soleil.fr">antoine.bergamaschi@synchrotron-soleil.fr</a>><br>To: <a ymailto="mailto:gate-users@lists.opengatecollaboration.org" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>Sent: Tuesday, April 14, 2015 10:05:51 AM<br>Subject: [Gate-users] Root not working in VGate 3.0<br><br>Hi all,<br><br>Everything is in the title, i am using the Gate V delivered as the version 3.0 and the root programme crash when using the "draw()" method due to the lack or a corrupted "libjpeg.so.62" and the fail to load libASImage.so ( which is present in the directory ).<br><br>I did not change a single bit of configuration on the VM.<br><br>Is a working version of the very usefull vGate disponible anywhere to download ?<br><br>Best regards,<br><br>Antoine Bergamaschi<br>_______________________________________________<br>Gate-users mailing list<br><a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br><br><br>------------------------------<br><br>_______________________________________________<br>Gate-users mailing list<br><a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br><br>End of Gate-users Digest, Vol 107, Issue 32<br>*******************************************<br><br><br></div> </div> </div> </div></div></body></html>