<div dir="ltr"><div class="gmail_extra"> <div class="gmail_quote">On Tue, Apr 14, 2015 at 8:40 AM, REUZE SYLVAIN <<a href="mailto:SYLVAIN.REUZE@gustaveroussy.fr" target="_blank">SYLVAIN.REUZE@gustaveroussy.fr</a>> wrote: <blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"> <div lang="FR" link="blue" vlink="blue"> <div> Hello, Thanks for your answer. Yes, ranges are contiguous in my file : -1050 -950 Air_0 -950 -850.906 Lung_1 -850.906 -751.812 Lung_2 -751.812 -652.718 Lung_3 -652.718 -553.624 Lung_4 -553.624 -454.531 Lung_5 -454.531 -355.437 Lung_6 … I only tried with the example 2 from Gate website, to learn how to include CT images in my simulation. Do you think there could be an issue with the format ? For example, spaces instead of tabulations ?</div></div></blockquote><div> </div><div>maybe. Please ensure that this is Gate 7.1 (or the develop branch of the git) and try to run examples/example_Radiotherapy/example2 from the source code to see if it happens ?</div><div> </div><div>David</div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div lang="FR" link="blue" vlink="blue"><div> Best regards, <div> Sylvain Reuzé Stagiaire physicien Département de Radiothérapie Service de physique médicale Tél. : <a href="tel:01%2042%2011%2054%2006" value="+33142115406" target="_blank">01 42 11 54 06</a> <a href="http://www.gustaveroussy.fr" target="_blank">www.gustaveroussy.fr</a> <img border="0" width="300" height="155" src="cid:image001.gif@01D0768E.40B87B50" align="baseline"> </div> <div> <div class="MsoNormal" align="center" style="text-align:center"> <hr size="2" width="100%" align="center"> </div> De : <a href="mailto:david.sarrut@gmail.com" target="_blank">david.sarrut@gmail.com</a> [mailto:<a href="mailto:david.sarrut@gmail.com" target="_blank">david.sarrut@gmail.com</a>] De la part de David Sarrut Envoyé : mardi 14 avril 2015 08:26 À : REUZE SYLVAIN Cc : <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a> Objet : Re: [Gate-users] Issue with GateHounsfieldMaterialTable (CT import) </div><div><div class="h5"> <div> Hello, <div> </div> <div> when converting HU to material, Gate read a txt file with the setHUToMaterialFile function. This file (sometimes named patient-HU2mat.txt in some examples) is made with several lines, each line start with a range of HU [a:b] -> material . It requires that the ranges are contiguous, so a is equal to previous b. </div> <div> </div> <div> Just check this file in your case </div> <div> </div> <div> Sincerely, </div> <div> David </div> </div> <div> <div> On Tue, Apr 7, 2015 at 4:13 PM, REUZE SYLVAIN <<a href="mailto:SYLVAIN.REUZE@gustaveroussy.fr" target="_blank">SYLVAIN.REUZE@gustaveroussy.fr</a>> wrote: <div link="blue" vlink="purple"> <div> Dear all, I still have an issue while opening CT images, with the example 2. I get this error message: <pre>GateHounsfieldMaterialTable.cc (l.124): Current H1=-1050 is different from previous H2=-950. Abort.</pre> This is a well-known issue, and according to some older threads in the mailing list, there is a patch to solve it. This patch has been created for an older version of Gate (6.0), can I use it with Gate 7.0 ? It doesn’t seem to change anything when I replace my GateHounsfieldMaterialTable file with the file from the patch. Does anyone have another solution ? Thanks in advance. Best regards, Sylvain Reuzé Stagiaire physicien Département de Radiothérapie Service de physique médicale Tél. : <a href="tel:01%2042%2011%2054%2006" value="+33142115406" target="_blank">01 42 11 54 06</a> <a href="http://www.gustaveroussy.fr" target="_blank">www.gustaveroussy.fr</a> <img border="0" width="300" height="155" src="cid:image001.gif@01D0768E.40B87B50" align="baseline"> </div> </div> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> </div> <div> </div> -- <div> <div> David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 <div> Centre de lutte contre le cancer Léon Bérard 28 rue Laënnec, 69373 Lyon cedex 08 Tel : <a href="tel:04%2078%2078%2051%2051" value="+33478785151" target="_blank">04 78 78 51 51</a> / <a href="tel:06%2074%2072%2005%2042" value="+33674720542" target="_blank">06 74 72 05 42</a> <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ </div> <div> "2 + 2 = 5, for extremely large values of 2" _________________________________ </div> </div> </div> </div> </div></div></div> </div> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> </blockquote></div> <div> </div>-- <div class="gmail_signature"><div dir="ltr">David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044<div>Centre de lutte contre le cancer Léon Bérard 28 rue Laënnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________</div><div> "2 + 2 = 5, for extremely large values of 2" _________________________________</div></div></div> </div></div>