<div dir="ltr">Hello, <div><br></div><div>it is now corrected in the "develop" branch (it will be available in the public repository soon <a href="https://github.com/OpenGATE/Gate">https://github.com/OpenGATE/Gate</a> ). </div><div><br></div><div>thanks to the two Simons</div><div>David</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 17, 2015 at 5:55 PM, Simon Rit <span dir="ltr"><<a href="mailto:simon.rit@creatis.insa-lyon.fr" target="_blank">simon.rit@creatis.insa-lyon.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Luc,<br>The idea is that only the md5 checksum is in the repository and the file should be automatically downloaded from midas. Clearly, looking at the file examples/CMakeLists.txt, the file is missing which is why it's not been downloaded. I'll discuss with David to correct this but in the meantime, it's available on Midas:<br><a href="http://midas3.kitware.com/midas/community/28" target="_blank">http://midas3.kitware.com/midas/community/28</a><span class="HOEnZb"><font color="#888888"><br>Simon<br></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 17, 2015 at 4:40 PM, Luc SIMON <span dir="ltr"><<a href="mailto:uhqd75@gmail.com" target="_blank">uhqd75@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">Dear Gaters,</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)"><br></p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">Sorry for multiple questions but when downloading data used for Example_Radiotherapy, I think a .raw file is missing : patient-4mm.raw (Example3)</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">Again on mac it is not obvious to understand what file in MD5/ is the good .raw used for an example (see list hereafter, as it is displayed using ls command). </p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">But using the .md5 information it is possible to compute the size (in bytes).</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)"><br></p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">In Example2, patient-2mm is a 126x126x111 image of short (2 bytes) = 3524472 bytes. In this list it is the 8th file. It is possible to create a symbolic link to this file and example2 works very well</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)"><br></p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">In Example3, patient-4mm is a 63x93x55 image of short = 436590 bytes. No file has this size in the list.</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">To summarize, can someone send me patient-4mm.raw ? (<a href="mailto:uhqd75@gmail.com" target="_blank">uhqd75@gmail.com</a>) </p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">Thanks for any help</p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)"><br></p><p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">-rw-r--r-- 1 lucsimon admin 4194304 16 mar 13:39 044a158a2617c05ed8fb657a27ed23ff</p>
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<p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">-rw-r--r-- 1 lucsimon admin 226795 16 mar 14:14 f7fe754b3cc066c664c5b408166d93e9</p>
<p style="margin:0px;font-size:15px;font-family:Menlo;background-color:rgb(254,244,156)">-rw-r--r-- 1 lucsimon admin 3407872 16 mar 14:15 f942d5a94d90ccfaa2bbc5823b790c44</p><div class="gmail_extra"><br><div class="gmail_quote"><span>2015-03-16 8:33 GMT+01:00 David Sarrut <span dir="ltr"><<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>></span>:<br></span><div><div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hello Luc, <div><br></div><div>did the file patient-2mm.raw exists ? An image is stored with 2 files : A.mhd (the header) and A.raw (the pixel data). </div><div><br></div><div>If not, in cmake, set GATE_DOWNLOAD_EXAMPLES_DATA to ON to download the data</div><div><br></div><div>welcome back to Gate ;)</div><div>David</div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div>On Thu, Mar 12, 2015 at 10:46 PM, Luc SIMON <span dir="ltr"><<a href="mailto:uhqd75@gmail.com" target="_blank">uhqd75@gmail.com</a>></span> wrote:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">Dear Gaters<div><br></div><div>It is a real pleasure to me to come back here after a 12 years break. I worked previously in Lausanne at the very beginning of Gate v1... </div><div>I am going to use Gate again for new purposes, in particular in RT.</div><div>Well... a lot to learn with all these new features.</div><div>I start with a newbee question, but if someone can help...</div><div><br></div><div>I installed GATE V7 on a mac book Yosemite 10.10.2</div><div>my configuration is at the end of this email, hereafter. </div><div><br></div><div>Well It half works. </div><div>I execute some exemples of Geant4 and GATE with success (PETcylindrilcal is ok with visualization !!)</div><div>But I try to execute Radiotherapy examples and it doesn't work.</div><div><br></div><div>I tried example_Radiotherapy/example2/mac/main-NPV1.mac</div><div><br></div>
<div>and it doesnt work.</div><div>The following command :</div><div>
<p><span>Idle> /control/execute mac/start.mac </span></p>
<p><span>gives :</span></p><p><span>[Core-0] Initialization of geometry</span></p>
<p><span>MetaImage: Read: Cannot open data file</span></p>
<p><span>GateMHDImage.cc (l.185): MHD File cannot be read: data/patient-2mm.mhd</span></p><p><span><br></span></p><p><span>I checked the rwx rights of the file patient-2mm.mhd </span></p><p><span>and it is ok (rwxrwxrwx)</span></p><p><span><br></span></p><p><span>Can someone has the same problem ?</span></p><p><span>I must add that I changed</span></p><p>#/vis/open OGLIQt</p><div>to </div><p>/vis/open<span style="white-space:pre-wrap"> </span>OGLSX</p><p><span></span></p><p>because it didn't work with OGLIQt</p><p><span>Thank you</span></p><p><span><br></span></p><p><span><br></span></p></div><div><br></div><div><br></div><div><br></div><div>config :</div><div>
<p><span>CMAKE 3.1.3</span></p><p><span>xcode 6.1.1</span></p><p><span>xquartz 2.7.7</span></p><p><span>cmake 2.8.12.2</span></p><p><span>CLHEP 2.1.3.1</span></p><p><span>root v5.34.26</span></p><p><span>GEANT4.9.6p04</span></p><p><span>GATE v7.0</span></p><span><font color="#888888"><div><br></div>-- <br><div>___________________<br><br>SIMON Luc, PhD<br>28, rue Pierre Barthes<br>31500 Toulouse</div>
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<br></div></div>_______________________________________________<br>
Gate-users mailing list<br>
<a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a><br>
<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><span><font color="#888888"><br></font></span></blockquote></div><span><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div><div dir="ltr">David Sarrut, Phd<br>Directeur de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm U 1044<div>Centre de lutte contre le cancer Léon Bérard<br>28 rue Laënnec, 69373 Lyon cedex 08<br>Tel : <a href="tel:04%2078%2078%2051%2051" value="+33478785151" target="_blank">04 78 78 51 51</a> / <a href="tel:06%2074%2072%2005%2042" value="+33674720542" target="_blank">06 74 72 05 42</a><br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div><div> "2 + 2 = 5, for extremely large values of 2"<br>_________________________________</div></div></div>
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</blockquote></div></div></div><div><div><br><br clear="all"><div><br></div>-- <br><div>___________________<br><br>SIMON Luc, PhD</div></div></div><div>IUCT-Oncopole / CRCT Team 15</div><div><br></div>
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<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br></blockquote></div><br></div>
</div></div><br>_______________________________________________<br>
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<a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br>
<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div dir="ltr">David Sarrut, Phd<br>Directeur de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm U 1044<div>Centre de lutte contre le cancer Léon Bérard<br>28 rue Laënnec, 69373 Lyon cedex 08<br>Tel : 04 78 78 51 51 / 06 74 72 05 42<br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div><div> "2 + 2 = 5, for extremely large values of 2"<br>_________________________________</div></div></div>
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