<html> <head> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> <style type="text/css" style="display:none"></style> </head> <body dir="ltr" style="font-size:12pt;color:#000000;background-color:#FFFFFF;font-family:Calibri,Arial,Helvetica,sans-serif;"> <p><font size="2">Hi Vesna, </font></p> <p><br> <font size="2"></font></p> <p><font size="2">thanks for your advice. I've now tried to reinstall Geant4 (v.9.6.p03 using the built in CLHEP, i.e. GEANT4_USE_SYSTEM_CLHEP OFF) and Gate (v7.0). To be sure, I've redirected GATE to use CLHEP 2.1.3.1. in case there is any issue with the built-in Geant4 version. </font></p> <p><br> <font size="2"></font></p> <p><font size="2">However, the same error message seem to occur when running the Optical_System.mac file. </font></p> <p><br> <font size="2"></font></p> <p><font size="2">Could it be some library files that for some reason are missing? Do you happen to know exactly how the Surfaces.xml-file is called? I think something might be incorrect there (at least with what I'm using).</font></p> <p><br> <font size="2"></font></p> <p><font size="2">Thanks again for your help,</font></p> <p><br> <font size="2"></font></p> <p><font size="2">/David<br> </font></p> <div id="Signature"> <div style="font-family:Tahoma; font-size:13px"><span lang="sv"></span></div> </div> <div style="color: rgb(33, 33, 33);"> <hr tabindex="-1" style="display:inline-block; width:98%"> <div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt" color="#000000" face="Calibri, sans-serif"><b>Från:</b> Vesna Cuplov <vesna.cuplov@gmail.com><br> <b>Skickat:</b> den 27 februari 2015 16:49<br> <b>Till:</b> David Larsson<br> <b>Kopia:</b> gate-users@lists.opengatecollaboration.org<br> <b>Ämne:</b> Re: [Gate-users] Optical processes error - No surface command enabled</font> <div> </div> </div> <div> <div dir="ltr"> <div> <div> <div> <div> <div> <div> <div>Hello David,<br> <br> </div> I just tried the example_OPTICAL from Gate v7.0 and it works. I tried both the Optical_System.mac (in that macro I had to change the EngineSeed from 123456789 to a smaller number like 210.... something was not behaving properly with the random seed generator on my installation, but that's not a major issue). <br> </div> This test means that the macros from the example_OPTICAL are correct and that there is a problem with your install I think. <br> <br> </div> I see that you use Geant4 10.0.3 instead of the recommended Geant4 9.6.p03.<br> </div> Also you do not need to use an external CLHEP version. Geant4 distributes a minimal version of CLHEP with the toolkit. So when configuring Geant4 before its compilation, you can leave the GEANT4_USE_SYSTEM_CLHEP OFF. If you still wish to use an other CLHEP version for GATE, it is recommended to use 2.1.3.1.<br> <br> </div> I think you should redo your install following the installation guide and the recommended software versions.<br> <br> </div> Hope this helps,<br> </div> vesna<br> <br> <div> <div> <div> <div> <div> <div> <div> <div> <div class="gmail_extra"> <div class="gmail_quote">On Fri, Feb 27, 2015 at 8:34 AM, David Larsson <span dir="ltr"> <<a href="mailto:david.larsson@sth.kth.se" target="_blank">david.larsson@sth.kth.se</a>></span> wrote:<br> <blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex"> <div dir="ltr" style="font-size:12pt; color:rgb(0,0,0); background-color:rgb(255,255,255); font-family:Calibri,Arial,Helvetica,sans-serif"> <p></p> <div> <div style="font-family:Tahoma; font-size:13px"><span lang="sv"> <div style="margin:0px"> <div> <div> <div dir="ltr" style="background-color:white"><font size="3" color="black" face="Calibri,Arial,Helvetica,sans-serif"><span dir="ltr" style="font-size:12pt; background-color:white"> <div style="margin-top:0px; margin-bottom:0px">Dear Gate-users,</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">I am asking a question related to an issue I raised in a previous question/conversation to the mail-list (see e.g. <a href="http://article.gmane.org/gmane.comp.science.opengate.user/4549/match=david+larsson" target="_blank"> http://article.gmane.org/gmane.comp.science.opengate.user/4549/match=david+larsson</a>)</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">I want to simulate optical photon processes and have, after having issues with a created macro, gone back to the provided examples of Gate v7.0 (./examples/example_OPTICAL), . However, when trying to run the provided macros my batch run is interrupted with the error below.</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">Apparently, even though I've added optical processes they seem not to be initialized. Similarly, Gate does not seem to recognize surfaces as a valid feature of my geometries. This even though I run everything from the example folder with the Surfaces.xml and Materials.xml in the same directory. </div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">I have succesfully re-compiled Gate with the optical processes set to 'ON' before attempting the simulations. I am running everything with the following versions:</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px"> Your current Root version is 5.34/22<br> <br> Your current Geant4 version is 10.0.3<br> <br> Your current CLHEP version is 2.1.4.1</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px"> Gate v7.0<br> <br> </div> <div style="margin-top:0px; margin-bottom:0px">Does anyone know what the problem might be and why I cannot succesfully simulate optical processes? Anyone having encountered something similar?</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">Any advice would be very helpful.</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">Regards,</div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">David Larsson<br> </div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">Error message: </div> <div style="margin-top:0px; margin-bottom:0px"><br> </div> <div style="margin-top:0px; margin-bottom:0px">***** COMMAND NOT FOUND </gate/crystal/surfaces/name Detection1> *****<br> <br> ***** Batch is interrupted!! *****<br> <br> List of Enabled processes:<br> <br> === Process: OpticalMie ===<br> Particle: opticalphoton<br> <br> === Process: OpticalBoundary ===<br> Particle: opticalphoton<br> <br> === Process: OpticalAbsorption ===<br> Particle: opticalphoton<br> <br> === Process: OpticalWLS ===<br> Particle: opticalphoton<br> <br> === Process: OpticalRayleigh ===<br> Particle: opticalphoton<br> <br> List of initialized processes:<br> <br> [Core-0] Initialization of geometry<br> [Core-0] Initialization of physics<br> [Physic-0] WARNING: manual physic lists are being deprecated.<br> Please, use physic list builder mechanism instead. Related documentation can be found at:<br> <a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics" target="_blank">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics</a><br> [Core-0] Initialization of actors<br> ***** COMMAND NOT FOUND </gate/digitizer/Singles/readout/setDepth 1> *****<br> <br> ***** Batch is interrupted!! *****<br> Pulse-processor type name 'opticaladder' was not recognised --> insertion request must be ignored!<br> Idle> <br> Session terminated.<br> <br> -------- EEEE ------- G4Exception-START -------- EEEE -------<br> *** G4Exception : UI0001<br> issued by : G4UIterminal::SignalHandler()<br> KeyboardInterrput with Ctrl-C<br> *** Fatal Exception *** core dump ***<br> -------- EEEE -------- G4Exception-END --------- EEEE -------<br> <br> <br> *** G4Exception: Aborting execution ***<br> Aborted (core dumped)<br> <br> </div> <div style="margin-top:0px; margin-bottom:0px">-----------</div> </span></font></div> </div> </div> </div> </span></div> </div> </div> <br> _______________________________________________<br> Gate-users mailing list<br> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br> </blockquote> </div> <br> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </div> </body> </html>