<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><span id="yui_3_16_0_1_1419081719114_3453"><font size="2" id="yui_3_16_0_1_1419081719114_3576">Dear Hermann,</font></span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><span><font size="2"><br></font></span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><span id="yui_3_16_0_1_1419081719114_3452"><font size="2" id="yui_3_16_0_1_1419081719114_3572">Thanks for your note. My problem is that my system can't find the "env_gate.sh". I even don't have a cmake file in the "job splitter" directory to compile. </font></span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><span id="yui_3_16_0_1_1419081719114_10732"><font size="2" id="yui_3_16_0_1_1419081719114_10731">Based on the directions in Gate manual, I should add two environment variables in my ".bashrc" file as below, am I right?</font></span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><span><font size="2"><br></font></span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr" class="" style=""><font size="2" class="" style="" id="yui_3_16_0_1_1419081719114_4660">export GC_DOT_GATE_DIR=/somedir/ >> (I set it to </font><span style="font-size: small;" class="" id="yui_3_16_0_1_1419081719114_8642">/home/soman/Gate/gate_v7/cluster_tools/jobsplitter)</span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr"><font size="2"></font></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr" class="" style=""><font size="2" class="" style="" id="yui_3_16_0_1_1419081719114_4037">export GC_GATE_EXE_DIR=/somedir/bin/Linux-g++/ >> (</font><font size="2" class="" id="yui_3_16_0_1_1419081719114_4660" style="">I set it to </font><span class="" id="yui_3_16_0_1_1419081719114_8642" style="font-size: small;">/home/soman/Gate/gate_v7/cluster_tools/jobsplitter)</span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr" class="" style=""><br></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr" class="" style=""><font size="2" class="" style="" id="yui_3_16_0_1_1419081719114_5314">However, when I go into above path in a terminal and write source env_gate.sh, my system can't find env_gate.sh. I don't know what's the problem. Thanks for any idea of yours and also ideas of other users, </font><span style="font-size: small;" class="">if any,</span><span style="font-size: small;" class=""> on this.</span></div><div id="yui_3_16_0_1_1419081719114_3390" dir="ltr" class="" style=""><font size="2" class="" style="" id="yui_3_16_0_1_1419081719114_10730">- Soman</font></div> <div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"> <font size="2" face="Arial"> On Tuesday, December 16, 2014 2:25 PM, Hermann Fuchs <hermann.fuchs@meduniwien.ac.at> wrote:<br> </font> </div> <br><br> <div class="y_msg_container"><div id="yiv6214733651"><div> Hi,<br clear="none"> <br clear="none"> at our place the following procedure worked on Scientific Linux 6 and Ubuntu 14.04 LTS.<br clear="none"> <br clear="none"> go to /opt/simulation/gate6_1/cluster_tools/jobsplitter <pre>cd /opt/simulation/gate6_1/cluster_tools/jobsplitter </pre> make sure Gate paths are set <pre>source /opt/simulation/gate6_1/env_gate.sh </pre> compile <pre>make </pre> Copy the library to the correct place <pre>cp /opt/simulation/gate6_1/cluster_tools/jobsplitter/tmp/Linux-g++/gjs/libgjs.so /opt/simulation/gate6_1/cluster_tools/jobsplitter/bin/Linux-g++ </pre> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/simulation/gate6_1/cluster_tools/jobsplitter/tmp/Linux-g++/gjs<br clear="none"> <br clear="none"> Cheers,<br clear="none"> Hermann<br clear="none"> <br clear="none"> On Wed, 2014-12-10 at 14:08 +0000, S. Saghamanesh wrote: <blockquote type="CITE"> Hi, </blockquote> <blockquote type="CITE"> <div class="yiv6214733651yqt6400374327" id="yiv6214733651yqtfd22749"><br clear="none"> <br clear="none"> </div></blockquote><div class="yiv6214733651yqt6400374327" id="yiv6214733651yqtfd66471"> <blockquote type="CITE"> I get this error when I try to make job splitter in its directory: </blockquote> <blockquote type="CITE"> <br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> Compiling GateMacfileParser.cc...<br clear="none"> ./src/GateMacfileParser.cc: In constructor ‘GateMacfileParser::GateMacfileParser(G4String, G4int, G4int, G4String*)’:<br clear="none"> ./src/GateMacfileParser.cc:41:26: error: ‘getpid’ was not declared in this scope<br clear="none"> make: *** [tmp/GateMacfileParser.o] Error 1<br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> <br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> What is it about? Does anybody know what's the procedure of installing job splitter? </blockquote> <blockquote type="CITE"> <br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> Thanks </blockquote> </div><blockquote type="CITE"><div class="yiv6214733651yqt6400374327" id="yiv6214733651yqtfd45353"> - Soman</div><br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> <br clear="none"> <br clear="none"> </blockquote> <blockquote type="CITE"> <pre>_______________________________________________ Gate-users mailing list <a rel="nofollow" shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> <a rel="nofollow" shape="rect" target="_blank" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> </pre> </blockquote> <br clear="none"> <table cellspacing="0" cellpadding="0" width="100%"><tbody><tr><td colspan="1" rowspan="1"> -- <pre>------------- DI Hermann Fuchs Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology Department of Radiation Oncology Medical University Vienna Währinger Gürtel 18-20 A-1090 Wien Tel. + 43 / 1 / 40 400 72710 Mail. hermann.fuchs@meduniwien.ac.at </pre><div class="yiv6214733651yqt6400374327" id="yiv6214733651yqtfd56695"> </div></td></tr></tbody></table><div class="yiv6214733651yqt6400374327" id="yiv6214733651yqtfd08167"> </div></div></div><br>_______________________________________________<br clear="none">Gate-users mailing list<br clear="none"><a shape="rect" ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br clear="none"><a shape="rect" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br><br></div> </div> </div> </div> </div></body></html>