<div dir="ltr">message 1: Gate V7 GPU libCore.so (Sara Beilla) I define ROOTSYS (export ROOTSYS=/home/beilla/Software/<div id=":dc6" class="">root_v5.34/) and then export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib/ (help by Massimiliano). </div><div id=":dc6" class="">That resolve the problem but when i run a simulation test, i still have a problem with my libCore.so: </div><div> There was a crash. This is the entire stack trace of all threads: =========================================================== #0 0x00007fbfee9705cc in __libc_waitpid (pid=5321, stat_loc=stat_loc entry=0x7fffae353f40, options=options entry=0) at ../sysdeps/unix/sysv/linux/waitpid.c:31 #1 0x00007fbfee8f51d2 in do_system (line=<optimized out>) at ../sysdeps/posix/system.c:148 #2 0x00007fbff178e0d3 in TUnixSystem::StackTrace() () from /home/beilla/Software/root_v5.34//lib/libCore.so #3 0x00007fbff178fddc in TUnixSystem::DispatchSignals(ESignals) () from /home/beilla/Software/root_v5.34//lib/libCore.so #4 <signal handler called> #5 0x00007fbff10c4d43 in TBufferFile::WriteFastArray(double const*, int) () from /home/beilla/Software/root_v5.34//lib/libRIO.so #6 0x00007fbff1734c94 in TArrayD::Streamer(TBuffer&) () from /home/beilla/Software/root_v5.34//lib/libCore.so #7 0x00007fbff1784a4b in TStreamerBase::WriteBuffer(TBuffer&, char*) () from /home/beilla/Software/root_v5.34//lib/libCore.so #8 0x00007fbff1230fd3 in int TStreamerInfo::WriteBufferAux<char**>(TBuffer&, char** const&, TStreamerInfo::TCompInfo* const*, int, int, int, int, int) () from /home/beilla/Software/root_v5.34//lib/libRIO.so </div><div>But i source : #ROOT source /home/beilla/Software/root_v5.34/bin/thisroot.sh export ROOTSYS=/home/beilla/Software/root_v5.34/ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib/ #CLHEP export PATH=$PATH:/home/beilla/Software/2.1.3.1-install/bin:/home/beilla/Software/2.1.3.1-install/include export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/beilla/Software/2.1.3.1-install/lib #CUDA export PATH=$PATH:/usr/local/cuda-6.5/bin export LD_LIBRARY_PATH=/usr/local/cuda-6.5/lib64:/lib #Geant4 source /home/beilla/Software/geant4/geant4.9.6.p03-install/bin/geant4.sh #Gate export PATH=$PATH:/home/beilla/Software/Gatev7.0/gate.7.0-install/bin define ROOTSYS (export ROOTSYS=/home/beilla/Software/<div id=":dc6" class="">root_v5.34/) and then export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib/</div> </div>Thank you in advance. </div><div class="gmail_extra"> <div><div dir="ltr"><div> ________________________________________________ Beilla Sara </div><div>Doctorante en Charge d'Enseignement </div><div>INSERM UMR825 </div><div>Imagerie Cérébrale & Handicaps Neurologiques </div><div>CHU PURPAN - Pavillon Baudot </div><div>Bureau 326 - 3ème étage </div><div>Place du Dr Baylac 31024 TOULOUSE - Cedex 3 UMR 1037 INSERM/UPS Team 15: Multi-resolution dosimetry for radiotherapy optimization </div><div>E-mail: <a href="mailto:sara.beilla@inserm.fr" target="_blank">sara.beilla@inserm.fr</a> </div></div></div> <div class="gmail_quote">2014-10-25 12:00 GMT+02:00 <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>>: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Gate V7 GPU libCore.so (Sara Beilla) 2. Too many randoms in PET NECR simulation (Leo Read) ---------------------------------------------------------------------- Message: 1 Date: Fri, 24 Oct 2014 17:22:34 +0200 From: Sara Beilla <<a href="mailto:beilla.sara1@gmail.com">beilla.sara1@gmail.com</a>> To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>>, <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> Subject: [Gate-users] Gate V7 GPU libCore.so Message-ID: <<a href="mailto:CAKYZ0_C%2Bq4u1Owb_2qB3YNSCmdoTqgrS3sXk87y93r-ptsp7MQ@mail.gmail.com">CAKYZ0_C+q4u1Owb_2qB3YNSCmdoTqgrS3sXk87y93r-ptsp7MQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Dear Gaters, I install Gate v7 on Ubuntu14.04 but when i run Gate i have an error message: Gate: error while loading shared libraries: libCore.so: cannot open shared object file: No such file or directory I find that this library is in this path: /home/beilla/Software/root_v5.34/lib/libCore.so However root works correctly. ________________________________________________ *Beilla Sara* Doctorante en Charge d'Enseignement INSERM UMR825 Imagerie C?r?brale & Handicaps Neurologiques CHU PURPAN - Pavillon Baudot Bureau 326 - 3?me ?tage Place du Dr Baylac 31024 TOULOUSE - Cedex 3 UMR 1037 INSERM/UPS Team 15: Multi-resolution dosimetry for radiotherapy optimization E-mail: <a href="mailto:sara.beilla@inserm.fr">sara.beilla@inserm.fr</a> -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20141024/13d44584/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20141024/13d44584/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Fri, 24 Oct 2014 15:57:45 -0400 From: Leo Read <<a href="mailto:leoread@gmail.com">leoread@gmail.com</a>> To: "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] Too many randoms in PET NECR simulation Message-ID: <CAAZkGQmp6o3kKnEgni82EF26+qt3c5vVf9xzm=<a href="mailto:1EghmWodCTPg@mail.gmail.com">1EghmWodCTPg@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Dear Gate Users, I'm simulating a noise-equivalent count rate curve in a PET scanner. The general trends for Trues and Scatter events are good. However, the random coincidences are increasing much more rapidly than what has been published for this scanner. As one might expect, this leads to a much poorer peak NECR than what is expected. It seems this question has been asked multiple times on the forum, without any responses [for example, Benedikt Rossboth asked a similar question on 2012-03-07 and Heesoon asked a question on 2013-11-26]. If somebody knows the reason why this might be happening, please share it with the forum. Also, please let me know if you have any suggested experiments to try for debugging purposes. Cheers! -------------- next part -------------- An HTML attachment was scrubbed... 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