<div dir="ltr"><div><div>Hey, On compiling with ROOT support ON. IT shows following error: ~/Downloads/gate.7.0-build$ make -j4 Scanning dependencies of target itkzlib Scanning dependencies of target ITKMetaIO [ 0%] [ 0%] [ 0%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/crc32.o Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/compress.o Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/adler32.o [ 0%] [ 0%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaUtils.o Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaArrow.o [ 0%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/deflate.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/gzio.o [ 1%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaBlob.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inffast.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inflate.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/inftrees.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/trees.o [ 1%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/uncompr.o [ 2%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaCommand.o [ 3%] Building C object itk-mhd/itkzlib/CMakeFiles/itkzlib.dir/zutil.o [ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaContour.o [ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaDTITube.o Linking C static library libitkzlib.a [ 3%] Built target itkzlib [ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaEllipse.o [ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaGroup.o [ 3%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaGaussian.o [ 4%] [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaImage.o Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaImageUtils.o [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaLandmark.o [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaLine.o [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaMesh.o [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaObject.o [ 4%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaOutput.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaScene.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaSurface.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaTube.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaVesselTube.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaTransform.o [ 5%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaTubeGraph.o [ 6%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaForm.o [ 6%] Building CXX object itk-mhd/MetaIO/CMakeFiles/ITKMetaIO.dir/metaArray.o Linking CXX static library libITKMetaIO.a [ 6%] Built target ITKMetaIO Scanning dependencies of target Gate [ 6%] [ 6%] [ 6%] [ 6%] Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o Building CXX object CMakeFiles/Gate.dir/Gate.cc.o Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o [ 6%] Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o [ 6%] Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o In file included from /home/ayush/Downloads/geant4-install/include/Geant4/G4TrajectoryContainer.hh:46:0, from /home/ayush/Downloads/geant4-install/include/Geant4/G4EventManager.hh:37, from /home/ayush/Downloads/geant4-install/include/Geant4/G4RunManagerKernel.hh:66, from /home/ayush/Downloads/geant4-install/include/Geant4/G4RunManager.hh:131, from /home/ayush/Downloads/gate_v7.0/source/general/include/GateRunManager.hh:30, from /home/ayush/Downloads/gate_v7.0/Gate.cc:25: /home/ayush/Downloads/geant4-install/include/Geant4/G4VTrajectory.hh:91:17: warning: ‘virtual void G4VTrajectory::DrawTrajectory() const’ was hidden [-Woverloaded-virtual] virtual void DrawTrajectory() const; ^ In file included from /home/ayush/Downloads/gate_v7.0/source/digits_hits/include/GateUserActions.hh:38:0, from /home/ayush/Downloads/gate_v7.0/source/physics/include/GateSourcePhaseSpace.hh:39, from /home/ayush/Downloads/gate_v7.0/source/physics/include/GateSourceMgr.hh:18, from /home/ayush/Downloads/gate_v7.0/Gate.cc:30: /home/ayush/Downloads/gate_v7.0/source/digits_hits/include/GateTrajectory.hh:74:17: warning: by ‘virtual void GateTrajectory::DrawTrajectory(G4int) const’ [-Woverloaded-virtual] virtual void DrawTrajectory(G4int i_mode=0) const; ^ [ 7%] Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o [ 7%] Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateVolumePlacement.cc.o [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateVVolume.cc.o /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc: In member function ‘void GateARFTableMgr::SaveARFToBinaryFile()’: /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:225:1: error: ‘ofstream’ was not declared in this scope ofstream dest; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:225:1: note: suggested alternative: In file included from /usr/include/c++/4.8/ios:38:0, from /usr/include/c++/4.8/istream:38, from /usr/include/c++/4.8/sstream:38, from /usr/include/c++/4.8/complex:45, from /home/ayush/Downloads/geant4-install/include/Geant4/G4Types.hh:67, from /home/ayush/Downloads/geant4-install/include/Geant4/G4ios.hh:39, from /home/ayush/Downloads/geant4-install/include/Geant4/globals.hh:49, from /home/ayush/Downloads/gate_v7.0/source/arf/include/GateARFTableMgr.hh:12, from /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:13: /usr/include/c++/4.8/iosfwd:160:34: note: ‘std::ofstream’ typedef basic_ofstream<char> ofstream; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:225:10: error: expected ‘;’ before ‘dest’ ofstream dest; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:226:1: error: ‘dest’ was not declared in this scope dest.open ( theFN.c_str() ); ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc: In member function ‘void GateARFTableMgr::LoadARFFromBinaryFile(G4String)’: /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:301:3: error: ‘ifstream’ was not declared in this scope ifstream dest; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:301:3: note: suggested alternative: In file included from /usr/include/c++/4.8/ios:38:0, from /usr/include/c++/4.8/istream:38, from /usr/include/c++/4.8/sstream:38, from /usr/include/c++/4.8/complex:45, from /home/ayush/Downloads/geant4-install/include/Geant4/G4Types.hh:67, from /home/ayush/Downloads/geant4-install/include/Geant4/G4ios.hh:39, from /home/ayush/Downloads/geant4-install/include/Geant4/globals.hh:49, from /home/ayush/Downloads/gate_v7.0/source/arf/include/GateARFTableMgr.hh:12, from /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:13: /usr/include/c++/4.8/iosfwd:157:34: note: ‘std::ifstream’ typedef basic_ifstream<char> ifstream; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:301:12: error: expected ‘;’ before ‘dest’ ifstream dest; ^ /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:302:3: error: ‘dest’ was not declared in this scope dest.open ( theFileName.c_str(),std::ios::binary ); ^ [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateCPETSystem.cc.o In file included from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/RotationX.icc:11:0, from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/RotationX.h:283, from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/Rotation.h:30, from /home/ayush/Downloads/geant4-install/include/Geant4/G4RotationMatrix.hh:41, from /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:26: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Units/PhysicalConstants.h: At global scope: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Units/PhysicalConstants.h:80:21: warning: ‘CLHEP::electron_charge’ defined but not used [-Wunused-variable] static const double electron_charge = - eplus; // see SystemOfUnits.h ^ In file included from /home/ayush/Downloads/geant4-install/include/Geant4/Randomize.hh:32:0, from /home/ayush/Downloads/geant4-install/include/Geant4/G4VProcess.hh:405, from /home/ayush/Downloads/geant4-install/include/Geant4/G4StepLimiter.hh:43, from /home/ayush/Downloads/gate_v7.0/source/physics/include/GatePhysicsList.hh:17, from /home/ayush/Downloads/gate_v7.0/source/geometry/include/GateDetectorConstruction.hh:20, from /home/ayush/Downloads/gate_v7.0/source/digits_hits/include/GateProjectionSet.hh:14, from /home/ayush/Downloads/gate_v7.0/source/arf/include/GateARFSD.hh:24, from /home/ayush/Downloads/gate_v7.0/source/arf/src/GateARFTableMgr.cc:27: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Random/Randomize.h:68:12: warning: ‘CLHEP::HepRandomGenActive’ defined but not used [-Wunused-variable] static int HepRandomGenActive = HepRandom::createInstance(); ^ make[2]: *** [CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [CMakeFiles/Gate.dir/all] Error 2 make: *** [all] Error 2 </div>Following options are "ON" : GATE_ANALYSIS_USE_FILE = ON GATE_ANALYSIS_USE_GENERAL = ON GATE_USE_GEANT4_UIVIS = ON GATE_USE_ROOT = ON GATE_USE_SYSTEM_CLHEP = ON GATE_USE_SYSTEM_CLHEP = ON </div>Thanks </div><div class="gmail_extra"> <div><div dir="ltr">Ayush Maheshwari<div>5th year B.Tech - M.Tech</div><div>Dept. of Engg. Design</div><div>IIT Madras</div> <div>Contact: +91-8124320800; +91-9008342006</div></div></div> <div class="gmail_quote">On 14 July 2014 13:40, Patay Gergely <<a href="mailto:patay.gergely@mediso.hu" target="_blank">patay.gergely@mediso.hu</a>> wrote: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"> I guess you tried to compile without ROOT support (GATE_USE_ROOT=OFF). Well, it just won't work, because the ARF (and a few other) source code will still hold some dependencies on ROOT in the source code. * The simple way is to build with ROOT (GATE_USE_ROOT=ON). * The other way is to fix the missing #ifdef G4ANALYSIS_USE_ROOT guarding lines in the source. <a href="https://dl.dropboxusercontent.com/u/43097994/gate7/root.patch.gz" target="_blank">https://dl.dropboxusercontent.com/u/43097994/gate7/root.patch.gz</a> With this patch applied, the code can be compiled with or without ROOT. Please note that if you choose to build Gate without ROOT, you will not be able to use a couple of its features (ARF, TriCoinc, DigiRoot, LinacBeam, various Actors, just to name a few). Gergely --- Gergely Patay physicist Mediso Medical Imaging Systems Ltd. Hungary On 2014-07-13 05:50, Ayush Maheshwari wrote: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"> Hello, I've successfully compiled CLHEP, Geant4, but I'm getting the following error when I try to 'make' GATE: gate.7.0-build$ make -j4 [ 2%] Built target itkzlib [ 6%] Built target ITKMetaIO [ 6%] [ 6%] [ 6%] [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateVVolume.cc.o Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateTrap.cc.o Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateMDBFieldDecoder.cc.o Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateSystemListManager.cc.o [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateWedge.cc.o [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateMDBFieldReader.cc.o /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc: In member function ‘void GateVVolume::AttachARFSD()’: /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc:630:12: error: invalid use of incomplete type ‘class GateARFSD’ if (arfSD->PrepareCreatorAttachment(this)) { ^ In file included from /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc:29:0: /home/ayush/Downloads/gate_v7.0/source/geometry/include/GateDetectorConstruction.hh:33:7: error: forward declaration of ‘class GateARFSD’ class GateARFSD; ^ /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc:639:23: error: cannot convert ‘GateARFSD*’ to ‘G4VSensitiveDetector*’ in assignment m_sensitiveDetector = arfSD; ^ [ 7%] Building CXX object CMakeFiles/Gate.dir/source/geometry/src/GateGeometryVoxelInterfileReader.cc.o In file included from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/RotationX.icc:11:0, from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/RotationX.h:283, from /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Vector/Rotation.h:30, from /home/ayush/Downloads/geant-install/include/Geant4/G4RotationMatrix.hh:41, from /home/ayush/Downloads/gate_v7.0/source/geometry/include/GateVolumePlacement.hh:17, from /home/ayush/Downloads/gate_v7.0/source/geometry/include/GateVVolume.hh:16, from /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc:10: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Units/PhysicalConstants.h: At global scope: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Units/PhysicalConstants.h:80:21: warning: ‘CLHEP::electron_charge’ defined but not used [-Wunused-variable] static const double electron_charge = - eplus; // see SystemOfUnits.h ^ In file included from /home/ayush/Downloads/geant-install/include/Geant4/Randomize.hh:32:0, from /home/ayush/Downloads/geant-install/include/Geant4/G4VProcess.hh:405, from /home/ayush/Downloads/geant-install/include/Geant4/G4StepLimiter.hh:43, from /home/ayush/Downloads/gate_v7.0/source/physics/include/GatePhysicsList.hh:17, from /home/ayush/Downloads/gate_v7.0/source/geometry/include/GateDetectorConstruction.hh:20, from /home/ayush/Downloads/gate_v7.0/source/geometry/src/GateVVolume.cc:29: /home/ayush/Downloads/2.1.3.1-install/include/CLHEP/Random/Randomize.h:68:12: warning: ‘CLHEP::HepRandomGenActive’ defined but not used [-Wunused-variable] static int HepRandomGenActive = HepRandom::createInstance(); ^ make[2]: *** [CMakeFiles/Gate.dir/source/geometry/src/GateVVolume.cc.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[1]: *** [CMakeFiles/Gate.dir/all] Error 2 make: *** [all] Error 2 Could anyone help me in figuring out the error ? Looks like a bug in the source code itself. My system is Ubuntu 12.04, 64-bit. - Ayush Maheshwari _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> </blockquote> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></blockquote></div> </div>