> Dear Gate users! > > Can anybody share information or experience for vGate installation on clusters. > I have installed VGate successfully on My main cluster. My question is , do I need to install vGate On each clusters respectively? After that install NFS , and MPI for sharing folder ? > I shall appreciate for response or suggestion > Best Regards > Jehangir <div class="gmail_quote">On Thu, Jul 10, 2014 at 2:49 PM, <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>> wrote: <blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Re: Orientation of mhd file (Albert Hirtl) ---------------------------------------------------------------------- Message: 1 Date: Thu, 10 Jul 2014 15:37:26 +0200 From: Albert Hirtl <<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a>> To: J?r?me Suhard <<a href="mailto:jerome@suhard.fr">jerome@suhard.fr</a>> Cc: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Orientation of mhd file Message-ID: <<a href="mailto:53BE9716.7080306@meduniwien.ac.at">53BE9716.7080306@meduniwien.ac.at</a>> Content-Type: text/plain; charset="utf-8"; Format="flowed" Hi, Ok thanks for your help and the clarification. By the way, is there a method to visualize voxelized sources which are read in from an interfile? At least I wasn't able to visualize it in order to check whether it is located where it should be. My workaround would be to read it in as phantom an check the position. However, in the manual it says, that I have to shift the source by half in -x and -y direction. Is there a better way to check the position? Cheers, Albert On 10/07/14 15:28, J?r?me Suhard wrote: > Hi, > > I can reproduce it. > Technically, my OpenGL custom commands are called one first time even > in Stored mode. At this moment, it seems that the rotation was not yet > applied. > But with X11 in Stored mode, there is no "refresh" of the graphical > scene thus leading to this artifact, you can remove it by forcing it with: > /vis/viewer/refresh > > Best regards, > > > 2014-07-10 9:25 GMT+02:00 Albert Hirtl <<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a> > <mailto:<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a>>>: > > Dear Simon, > > Thanks for the header. I thought it's best if I simply sent you > some screen shots from my system (attached). I hope the names make > clear what's in the image. Summarized one can say, that OGLIX does > what it should, OGLSX, however, at least on my system, does not > what I expect it to do. > > The command > > glxinfo | grep "OpenGL version" > > gives > > OpenGL version string: 2.1 Mesa 9.0-devel > > I am running Scientific Linux 6.0. > > Maybe everything is as it is expected to be? And simply I > misunderstand the properties of OGLSX? > > Cheers, > Albert > > > On 09/07/14 16:59, Simon Rit wrote: >> Thanks for sharing the data with us. I tested on my computer and >> I have the expected behavior, i.e., >> - the image is upside down because Y goes from bottom to the top >> on Gate and it's the opposite in VV, >> - if I set >> /gate/patient/placement/setRotationAngle 180 deg >> then it is back to its normal position >> - same thing if I use the enclosed mhd but it is now upside down >> in VV >> - if I do the last two points together, it's back to the original >> position. >> Is this not what you observe? >> Simon >> >> >> On Wed, Jul 9, 2014 at 3:55 PM, Albert Hirtl >> <<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a> >> <mailto:<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a>>> wrote: >> >> Hi, >> >> Please find attached my very basic macros and the header of >> my image file that I used to play around with the .mhd >> feature (as tar archive). I can not send the raw data, since >> even if I gzip them they are larger than 11 MB and my mail is >> rejected. Do you have a mailbox which accepts more than 11 MB? >> >> Thanks again and cheers, >> Albert >> >> >> >> >> On 09/07/14 15:32, J?r?me Suhard wrote: >>> X stands for X11 (old static window) >>> Qt stands for ... Qt ( GUI with mouse support) >>> >>> S(tored) mode: you just see a box >>> I(mmediate) mode: you see your image with Gate7 >>> >>> so OGLS or OGLI should not change orientation and/or rotation... >>> >>> If you have time to send me your CT/macro, I'm still >>> interested by them >>> >>> >>> 2014-07-09 15:24 GMT+02:00 Albert Hirtl >>> <<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a> >>> <mailto:<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a>>>: >>> >>> Hi, >>> >>> Thanks for the prompt answer, it was already enough to >>> solve the problem: >>> >>> I initially copied the following line from the >>> example_PHANTOM_SOURCE/Voxelized_Phantom_Source/mainMacro.mac >>> >>> /vis/open OGLSX >>> >>> Motivated by your answer I tried OGL*I*X and everything >>> is fine... Now all orientations are correct and >>> rotations work properly. >>> >>> So, could OGLSX be a typo in the example? >>> >>> Thanks a lot for you help! >>> >>> Cheers, >>> Albert (a bit embarrassed :-[ ) >>> >>> >>> >>> On 09/07/14 15:09, J?r?me Suhard wrote: >>>> Hi, >>>> >>>> 2014-07-09 15:01 GMT+02:00 Albert Hirtl >>>> <<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a> >>>> <mailto:<a href="mailto:albert.hirtl@meduniwien.ac.at">albert.hirtl@meduniwien.ac.at</a>>>: >>>> >>>> If I display the CT using OGLSX it seems to be >>>> bottom up. >>>> >>>> >>>> You mean OGL*I*X, right ? >>>> >>>> /gate/patient/placement/setRotationAxis 0 0 1 >>>> /gate/patient/placement/setRotationAngle >>>> XXXX deg >>>> >>>> it stays the same. In vv it was in the correct >>>> orientation. The box that is plotted around the CT >>>> seems to be rotating, however. Do I make anything >>>> wrong? Or is just the image that I see in OGLSX not >>>> rotating? >>>> >>>> >>>> can you give the most small macro with the CT showing >>>> this behaviour ? >>>> >>>> thanks >>>> >>>> -- >>>> J?r?me Suhard >>> >>> >>> -- >>> Medizinische Universit?t Wien >>> Universit?tsklinik f?r Radiologie und Nuklearmedizin >>> W?hringer G?rtel 18-20 >>> 1090 Wien >>> Austria >>> >>> Tel.:<a href="tel:%2B43%20%280%29%201%20%2F%2040400%2055450" value="+4314040055450">+43 (0) 1 / 40400 55450</a> <tel:%2B43%20%280%29%201%20%2F%2040400%2055450> >>> >>> Web: >>> <a href="http://www.meduniwien.ac.at/user/albert.hirtl" target="_blank">http://www.meduniwien.ac.at/user/albert.hirtl</a> >>> <a href="http://www.meduniwien.ac.at/moccamed/" target="_blank">http://www.meduniwien.ac.at/moccamed/</a> >>> >>> >>> >>> >>> -- >>> J?r?me Suhard >> >> >> -- >> Medizinische Universit?t Wien >> Universit?tsklinik f?r Radiologie und Nuklearmedizin >> W?hringer G?rtel 18-20 >> 1090 Wien >> Austria >> >> Tel.:<a href="tel:%2B43%20%280%29%201%20%2F%2040400%2055450" value="+4314040055450">+43 (0) 1 / 40400 55450</a> <tel:%2B43%20%280%29%201%20%2F%2040400%2055450> >> >> Web: >> <a href="http://www.meduniwien.ac.at/user/albert.hirtl" target="_blank">http://www.meduniwien.ac.at/user/albert.hirtl</a> >> <a href="http://www.meduniwien.ac.at/moccamed/" target="_blank">http://www.meduniwien.ac.at/moccamed/</a> >> >> >> _______________________________________________ >> Gate-users mailing list >> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> >> <mailto:<a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a>> >> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> >> >> > > > -- > Medizinische Universit?t Wien > Universit?tsklinik f?r Radiologie und Nuklearmedizin > W?hringer G?rtel 18-20 > 1090 Wien > Austria > > Tel.:<a href="tel:%2B43%20%280%29%201%20%2F%2040400%2055450" value="+4314040055450">+43 (0) 1 / 40400 55450</a> <tel:%2B43%20%280%29%201%20%2F%2040400%2055450> > > Web: > <a href="http://www.meduniwien.ac.at/user/albert.hirtl" target="_blank">http://www.meduniwien.ac.at/user/albert.hirtl</a> > <a href="http://www.meduniwien.ac.at/moccamed/" target="_blank">http://www.meduniwien.ac.at/moccamed/</a> > > > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> > <mailto:<a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a>> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > > > > > -- > J?r?me Suhard -- Medizinische Universit?t Wien Universit?tsklinik f?r Radiologie und Nuklearmedizin W?hringer G?rtel 18-20 1090 Wien Austria Tel.: <a href="tel:%2B43%20%280%29%201%20%2F%2040400%2055450" value="+4314040055450">+43 (0) 1 / 40400 55450</a> Web: <a href="http://www.meduniwien.ac.at/user/albert.hirtl" target="_blank">http://www.meduniwien.ac.at/user/albert.hirtl</a> <a href="http://www.meduniwien.ac.at/moccamed/" target="_blank">http://www.meduniwien.ac.at/moccamed/</a> -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140710/b9bc7416/attachment.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140710/b9bc7416/attachment.html</a>> -------------- next part -------------- A non-text attachment was scrubbed... Name: albert_hirtl.vcf Type: text/x-vcard Size: 397 bytes Desc: not available URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140710/b9bc7416/attachment.vcf" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140710/b9bc7416/attachment.vcf</a>> ------------------------------ _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> End of Gate-users Digest, Vol 98, Issue 18 ****************************************** </blockquote></div>