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<pre style="word-wrap:break-word; font-size:10.0pt; font-family:Tahoma; color:black">Hi David,
Thanks for your reply.
I am using gcc4.4.4
is that ok for G4 9.6.3?
-------- Original Message --------
Subject: Re: [Gate-users] Gate v7 installation problem
From: David Sarrut <David.Sarrut@creatis.insa-lyon.fr>
Date: Wed, 2014-06-11 15:39
To: Tasneem Rahman <Tasneem.Rahman@student.adfa.edu.au>
CC: Beien Wang <benjaminwang91@gmail.com>,gate-users@lists.opengatecollaboration.org
</pre>
<div>
<div dir="ltr">Hello,
<div><br>
</div>
<div>what is your gcc version ? G4 9.6.3 is compatible with gcc 4.2.1 </div>
<div><br>
</div>
<div>David</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On Tue, Jun 10, 2014 at 1:40 PM, Tasneem Rahman <span dir="ltr">
<<a href="mailto:Tasneem.Rahman@student.adfa.edu.au" target="_blank">Tasneem.Rahman@student.adfa.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
<div>
<pre style="word-wrap:break-word; font-size:10.0pt; font-family:Tahoma; color:black">Hi Beien,
Still figuring out my problem. would you please tell me what are the versions you have used for CLHEP, root and geant ? may be I can get something from there. Thanks.
Cheers
Smita
-------- Original Message --------
Subject: Re: [Gate-users] Gate v7 installation problem
From: Beien Wang <<a href="mailto:benjaminwang91@gmail.com" target="_blank">benjaminwang91@gmail.com</a>>
Date: Mon, 2014-06-09 19:27
To: Tasneem Rahman <<a href="mailto:Tasneem.Rahman@student.adfa.edu.au" target="_blank">Tasneem.Rahman@student.adfa.edu.au</a>>
CC: <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a>
</pre>
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<div class="h5">
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<div dir="ltr">
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<div>
<div>Dear Smita,<br>
<br>
</div>
I think we are having different problems, since the located error files are different (I read you post in the mailing-list). It is possible that you have a minor modification different files like what I did and the problem might be solved. I don't know, but
good luck!<br>
<br>
</div>
Best,<br>
</div>
Beien<br>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On 8 June 2014 06:37, Tasneem Rahman <span dir="ltr"><<a href="mailto:Tasneem.Rahman@student.adfa.edu.au" target="_blank">Tasneem.Rahman@student.adfa.edu.au</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
<div lang="EN-AU">
<div>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d">Dear Beien,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d">Thanks for your help. But it didn’t bring any luck for me. Don’t really sure now how to proceed.
</span><span style="font-size:11.0pt; font-family:Wingdings; color:#1f497d">L</span><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d">Cheers,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d">Smita<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt; font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt; font-family:"Tahoma","sans-serif""> Beien Wang [mailto:<a href="mailto:benjaminwang91@gmail.com" target="_blank">benjaminwang91@gmail.com</a>]
<br>
<b>Sent:</b> Saturday, 7 June 2014 6:24 PM<br>
<b>To:</b> Tasneem Rahman<br>
<b>Cc:</b> <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">
gate-users@lists.opengatecollaboration.org</a></span></p>
<div>
<div><br>
<b>Subject:</b> Re: [Gate-users] Gate v7 installation problem<u></u><u></u></div>
</div>
<p></p>
<div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
<div>
<p class="MsoNormal">Dear Tasneem,<u></u><u></u></p>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
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<div>
<p class="MsoNormal">Sorry I don't have that file at hand these days. But what I have done is quite simple. Just locate the error file: path_to_geant4/<b><span style="font-size:10.0pt; font-family:"Arial","sans-serif"">geant4/geant4.9.6.p03-install/include/Geant4/G4NeutronHPVector.hh</span></b><span style="font-size:10.0pt; font-family:"Arial","sans-serif"">,
and locate the error line <b>403: error: ‘__isnan’ is not a member of ‘std’. </b>
Change the error std::isnan(...) to isnan(...). Then the error disappears. I have no idea of why this error exists, neither do I have any idea of why this way solve the problem without trigger further problem... Good luck!</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.0pt; font-family:"Arial","sans-serif"">Best,</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Beien<u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><u></u> <u></u></p>
<div>
<p class="MsoNormal">On 6 June 2014 15:22, Tasneem Rahman <<a href="mailto:Tasneem.Rahman@student.adfa.edu.au" target="_blank">Tasneem.Rahman@student.adfa.edu.au</a>> wrote:<u></u><u></u></p>
<div>
<pre style="word-wrap:break-word"><span style="font-family:"Tahoma","sans-serif"; color:black">Dear Beien,<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">I am having the exact problem. would you mind to send me the link of the error file as you mentioned where I can modify the same?Thanks.<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">Cheers,<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">Smita<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">-------- Original Message --------<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">Subject: Re: [Gate-users] Gate v7 installation problem<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">From: Beien Wang <<a href="mailto:benjaminwang91@gmail.com" target="_blank">benjaminwang91@gmail.com</a>><u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">Date: Fri, 2014-06-06 22:02<u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">To: "Schnerr R.S. (Roald)" <<a href="mailto:roald.schnerr@mumc.nl" target="_blank">roald.schnerr@mumc.nl</a>><u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black">CC: <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a><u></u><u></u></span></pre>
<pre><span style="font-family:"Tahoma","sans-serif"; color:black"><u></u> <u></u></span></pre>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal">Dear Roald,<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<p class="MsoNormal">Finally I fix it out by modifying the line in the error file. The error is 'isnan is not a member of std', and I just change that line from std::isnan to isnan. Then the problem was solved. Thank you all!
<u></u><u></u></p>
<div>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
<div>
<p class="MsoNormal">Best,<u></u><u></u></p>
</div>
<div>
<p class="MsoNormal">Beien<u></u><u></u></p>
</div>
</div>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><u></u> <u></u></p>
<div>
<p class="MsoNormal">On 5 June 2014 15:46, Schnerr R.S. (Roald) <<a href="mailto:roald.schnerr@mumc.nl" target="_blank">roald.schnerr@mumc.nl</a>> wrote:<u></u><u></u></p>
<p class="MsoNormal">Perhaps try it without the -j4 option. So just make. That helped in my case. Apparently it suffers from some sort of race condition.<br>
<br>
Best wishes,<br>
Roald<u></u><u></u></p>
<div>
<div>
<p class="MsoNormal"><br>
> -----Original Message-----<br>
> From: <a href="mailto:gate-users-bounces@lists.opengatecollaboration.org" target="_blank">
gate-users-bounces@lists.opengatecollaboration.org</a> [mailto:<a href="mailto:gate-" target="_blank">gate-</a><br>
> <a href="mailto:users-bounces@lists.opengatecollaboration.org" target="_blank">
users-bounces@lists.opengatecollaboration.org</a>] On Behalf Of Beien Wang<br>
> Sent: donderdag 5 juni 2014 13:52<br>
> To: <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">
gate-users@lists.opengatecollaboration.org</a><br>
> Subject: [Gate-users] Gate v7 installation problem<br>
><br>
> Dear gate users,<br>
><br>
><br>
> I am struggling to install Gate v7.0 on my Scientific Linux 5.3<br>
> computer. GEANT4 and CLHEP have been installed successfully (at least I<br>
> believe so). GATE is also successfully configured by cmake. But when I<br>
> manage to follow the instruction and use make -j4 to install it, the<br>
> error below occurs. Can any one help me with it? Thanks!<br>
><br>
><br>
> Best,<br>
><br>
> Beien<br>
><br>
><br>
> The problem after make -j4<br>
><br>
><br>
> Linking CXX static library libITKMetaIO.a [ 6%] Built target ITKMetaIO<br>
> [ 6%] [ 6%] [ 6%] Building CXX object CMakeFiles/Gate.dir/Gate.cc.o<br>
> [ 6%] Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRootMessenger.cc.o<br>
> Building CXX object CMakeFiles/Gate.dir/source/arf/src/GateARFSD.cc.o<br>
> Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFSDMessenger.cc.o<br>
> [ 6%] Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFTable.cc.o<br>
> /home/wuwei/programs/geant4/geant4.9.6.p03-<br>
> install/include/Geant4/G4NeutronHPVector.hh: In member function ‘void<br>
> G4NeutronHPVector::IntegrateAndNormalise()’:<br>
> /home/wuwei/programs/geant4/geant4.9.6.p03-<br>
> install/include/Geant4/G4NeutronHPVector.hh:403: error: ‘__isnan’ is<br>
> not a member of ‘std’<br>
> [ 6%] Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgrMessenger.cc.o<br>
> [ 7%] Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFTableMgr.cc.o<br>
> [ 7%] Building CXX object<br>
> CMakeFiles/Gate.dir/source/arf/src/GateARFDataToRoot.cc.o<br>
> /home/wuwei/programs/CLHEP/2.1.3.1-<br>
> install/include/CLHEP/Units/PhysicalConstants.h: At global scope:<br>
> /home/wuwei/programs/CLHEP/2.1.3.1-<br>
> install/include/CLHEP/Units/PhysicalConstants.h:80: warning:<br>
> ‘CLHEP::electron_charge’ defined but not used<br>
> /home/wuwei/programs/CLHEP/2.1.3.1-<br>
> install/include/CLHEP/Random/Randomize.h:68: warning:<br>
> ‘CLHEP::HepRandomGenActive’ defined but not used<br>
> make[2]: *** [CMakeFiles/Gate.dir/Gate.cc.o] Error 1<br>
> make[2]: *** Waiting for unfinished jobs....<br>
> make[1]: *** [CMakeFiles/Gate.dir/all] Error 2<br>
> make: *** [all] Error 2<br>
><br>
> --<br>
><br>
> Beien Wang<br>
> Master's student at KTH, Royal Institute of Technology<br>
> Email: <a href="mailto:benjaminwang91@gmail.com" target="_blank">benjaminwang91@gmail.com</a><u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
</div>
<p class="MsoNormal">-- <u></u><u></u></p>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Beien Wang</span> <u>
</u><u></u></p>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Master's student at KTH, Royal Institute of Technology</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Courier New"">Mobile telephone: <a href="tel:%2B46%20720%20327%20308" target="_blank">
+46 720 327 308</a></span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Courier New"">Email: <a href="mailto:benjaminwang91@gmail.com" target="_blank">
benjaminwang91@gmail.com</a></span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:"Courier New"">Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden</span><u></u><u></u></p>
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<p class="MsoNormal">-- <u></u><u></u></p>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Beien Wang</span><u></u><u></u></p>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Master's student at KTH, Royal Institute of Technology</span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Mobile telephone: <a href="tel:%2B46%20720%20327%20308" value="+46720327308" target="_blank">
+46 720 327 308</a></span><u></u><u></u></p>
</div>
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<p class="MsoNormal"><span style="font-family:"Courier New"">Email: <a href="mailto:benjaminwang91@gmail.com" target="_blank">
benjaminwang91@gmail.com</a></span><u></u><u></u></p>
</div>
<div>
<p class="MsoNormal"><span style="font-family:"Courier New"">Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden</span><u></u><u></u></p>
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</blockquote>
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<br>
<br clear="all">
<br>
-- <br>
<div dir="ltr"><font face="courier new, monospace">Beien Wang</font>
<div><font face="courier new, monospace">Master's student at KTH, Royal Institute of Technology</font></div>
<div><font face="courier new, monospace">Mobile telephone: <a href="tel:%2B46%20720%20327%20308" value="+46720327308" target="_blank">
+46 720 327 308</a></font></div>
<div><font face="courier new, monospace">Email: <a href="mailto:benjaminwang91@gmail.com" target="_blank">
benjaminwang91@gmail.com</a></font></div>
<div><font face="courier new, monospace">Address: Ekebergabacken 4A-1032, 123 63 Farsta, Sweden</font></div>
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<div dir="ltr">David Sarrut, Phd<br>
Directeur de recherche CNRS<br>
CREATIS, UMR CNRS 5220, Inserm U 1044
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