<div dir="ltr"><div><div><div>Message 1." Re: Meaning of attachTo in phase space source" </div>Dear all, </div>If you used for instance: /gate/source/addSource MyBeam phaseSpace gate/source/MyBeam/attachTo myVolume </div><div><div> </div><div>the phase space file don't attach in "myVolume". </div><div>attachTo can be used at the moment of generate the phase space file with GATE but </div><div>we can use it to attach a phase space created by other code? </div><div>When i use it, my particles don't attach in myVolume, they are not generated since myVolume but of another place. </div><div> </div><div>How can we use the command "useVolumeFrame"? , if i do: /gate/source/MyBeam/useVolumeFrame myVolume </div><div>It doesn't work. </div><div>Best regards, </div><div>Sara </div> <div> </div><div>________________________________________________ <div><div><div class="gmail_extra"><div><div dir="ltr"><div> Beilla Sara </div><div>Doctorante en Charge d'Enseignement </div><div>INSERM UMR825 </div><div>Imagerie Cérébrale & Handicaps Neurologiques </div><div>CHU PURPAN - Pavillon Baudot </div><div>Bureau 326 - 3ème étage </div><div>Place du Dr Baylac 31024 TOULOUSE - Cedex 3 INSERM 1037 - équipe n°15 Faculté de médecine de Rangueil – Bat A3 biophysique 133 route de Narbonne - 31062 TOULOUSE </div><div>E-mail: <a href="mailto:sara.beilla@inserm.fr" target="_blank">sara.beilla@inserm.fr</a> </div></div></div> <div class="gmail_quote">2014-04-25 9:58 GMT+02:00 <<a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a>>: <blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Send Gate-users mailing list submissions to <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a> To subscribe or unsubscribe via the World Wide Web, visit <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> or, via email, send a message with subject or body 'help' to <a href="mailto:gate-users-request@lists.opengatecollaboration.org" target="_blank">gate-users-request@lists.opengatecollaboration.org</a> You can reach the person managing the list at <a href="mailto:gate-users-owner@lists.opengatecollaboration.org" target="_blank">gate-users-owner@lists.opengatecollaboration.org</a> When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..." Today's Topics: 1. Re: Meaning of attachTo in phase space source (David Sarrut) 2. Re: Clarification regarding KillActor (David Sarrut) 3. TImeSlice in static PET simulation (Yunfeng Guo) 4. Fwd: PhD position : Monte-Carlo simulations for hadron beam characterisation in a hadrontherapy center (David Sarrut) ---------------------------------------------------------------------- Message: 1 Date: Thu, 24 Apr 2014 22:01:18 +0200 From: David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>> To: Stathis Kamperis <<a href="mailto:ekamperi@gmail.com" target="_blank">ekamperi@gmail.com</a>> Cc: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Meaning of attachTo in phase space source Message-ID: <CAKTJC4D0j+OqArZKpdJdy_mBg=duXDhQmoQUbVV=+<a href="mailto:CXQZao_kQ@mail.gmail.com" target="_blank">CXQZao_kQ@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hello Stathis, - to attach the phase space (with the attachTo command) to a volume V means that particles information will be stored in the phase space only when they reach the volume V - in your question you may refer to the "useVolumeFrame" flag ? If the flag is off (default) the particle coordinates are expressed in Gate world coordinate system. I the flag is on, the particle coordinates are expressed in the volume V coordinate system. It means that when using the phase space as a source, if you change the position of the volume V, particle will also be moved. This is not the case if the flag is off. David On Thu, Apr 24, 2014 at 1:32 PM, David Sarrut <<a href="mailto:david.sarrut@gmail.com" target="_blank">david.sarrut@gmail.com</a>>wrote: > Hello Stathis, > > - to attach the phase space (with the attachTo command) to a volume V > means that particles information will be stored in the phase space only > when they reach the volume V > > - in your question you may refer to the "useVolumeFrame" flag ? If the > flag is off (default) the particle coordinates are expressed in Gate world > coordinate system. I the flag is on, the particle coordinates are expressed > in the volume V coordinate system. It means that when using the phase space > as a source, if you change the position of the volume V, particle will also > be moved. This is not the case if the flag is off. > > David > > > > Le 23 avr. 2014 ? 01:08, Stathis Kamperis <<a href="mailto:ekamperi@gmail.com" target="_blank">ekamperi@gmail.com</a>> a ?crit : > > > > Hi people, > > > > how does attaching to world vs. attaching to some plane differs in the > > context of phase space source files ? Is attaching to plane only > > useful for moving sources ? > > > > Thanks! > > > > Best regards, > > Stathis > > _______________________________________________ > > Gate-users mailing list > > <a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a> > > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > -- David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 Centre de lutte contre le cancer L?on B?rard 28 rue La?nnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ "2 + 2 = 5, for extremely large values of 2" _________________________________ -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140424/d576196e/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140424/d576196e/attachment-0001.html</a>> ------------------------------ Message: 2 Date: Fri, 25 Apr 2014 09:03:36 +0200 From: David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>> To: Stathis Kamperis <<a href="mailto:ekamperi@gmail.com" target="_blank">ekamperi@gmail.com</a>> Cc: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a>> Subject: Re: [Gate-users] Clarification regarding KillActor Message-ID: <CAKTJC4CSZRWOysSpiK6Kt=<a href="mailto:qwurqAmDLQR2NvNPtBc7pQ9wXXiw@mail.gmail.com" target="_blank">qwurqAmDLQR2NvNPtBc7pQ9wXXiw@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hello Stathis, 1) yes 2) actor are in general inherited by daughter 3) not sure for volume filtering On your example, please check that you dont have overlapping volume. Sincerely, David On Mon, Apr 21, 2014 at 4:52 PM, Stathis Kamperis <<a href="mailto:ekamperi@gmail.com" target="_blank">ekamperi@gmail.com</a>>wrote: > If I send a gamma beam from z=-110cm towards positive z's and there's > a wedge at z=-100cm and I have a KillActor for gammas inside the > wedge, the beam still passes through. > > Any ideas? > > Best regards, > Stathis > > On Mon, Apr 21, 2014 at 5:40 PM, Stathis Kamperis <<a href="mailto:ekamperi@gmail.com" target="_blank">ekamperi@gmail.com</a>> > wrote: > > Hi people, > > > > 1. when I attach a KillActor to some (mother) volume, it kills > > particles entering that (mother) volume. Correct ? > > > > 2. Does it also kill particles entering into daughter volumes of the > > mother volume ? > > > > 3. Is it possible to combine volume filtering and particle filtering > > in the same KillActor ? > > > > Best regards, > > Stathis > _______________________________________________ > Gate-users mailing list > <a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecollaboration.org</a> > <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a> > -- David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 Centre de lutte contre le cancer L?on B?rard 28 rue La?nnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ "2 + 2 = 5, for extremely large values of 2" _________________________________ -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140425/37495e8b/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140425/37495e8b/attachment-0001.html</a>> ------------------------------ Message: 3 Date: Fri, 25 Apr 2014 15:56:04 +0800 From: Yunfeng Guo <<a href="mailto:guoyfsjtu@gmail.com" target="_blank">guoyfsjtu@gmail.com</a>> To: <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a> Subject: [Gate-users] TImeSlice in static PET simulation Message-ID: <<a href="mailto:CAP9X-DPwnhj0r_NUd1RxeOh3XzpUb9h%2Bh3a5_9addJN5DCX6mg@mail.gmail.com" target="_blank">CAP9X-DPwnhj0r_NUd1RxeOh3XzpUb9h+h3a5_9addJN5DCX6mg@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Dear all, I'm doing PET simulation during which the PET system is static, now I wonder if the results of the following two conditions are same ? (1) /gate/application/setTimeSlice 10. s /gate/application/setTimeStart 0. s /gate/application/setTimeStop 10. s (2) /gate/application/setTimeSlice 1. s /gate/application/setTimeStart 0. s /gate/application/setTimeStop 10. s setTimeStop is same but setTimeSlice is not equal, and I will add all the timeslices in (2) , then compared with (1), do they mean the same simulation ? thanks a lot ! -------------- next part -------------- An HTML attachment was scrubbed... URL: <<a href="http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140425/80601c03/attachment-0001.html" target="_blank">http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20140425/80601c03/attachment-0001.html</a>> ------------------------------ Message: 4 Date: Fri, 25 Apr 2014 10:34:09 +0200 From: David Sarrut <<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank">David.Sarrut@creatis.insa-lyon.fr</a>> To: gate-users <<a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecollaboration.org</a>> Subject: [Gate-users] Fwd: PhD position : Monte-Carlo simulations for hadron beam characterisation in a hadrontherapy center Message-ID: <CAKTJC4A9CmYe=OmhTACxpb9D=<a href="mailto:LC2kgYjoO6OAtbFUGsncGFcxg@mail.gmail.com" target="_blank">LC2kgYjoO6OAtbFUGsncGFcxg@mail.gmail.com</a>> Content-Type: text/plain; charset="utf-8" Hello, the CREATIS lab in collaboration with MedAustron, the new Austrian hadrontherapy center, is seeking for a PhD candidate on "Monte-Carlo simulations for hadron beam characterization in a hadrontherapy center". More details available at <a href="http://www.creatis.insa-lyon.fr/site/en/node/44990and" target="_blank">http://www.creatis.insa-lyon.fr/site/en/node/44990and</a> in the attached file. Sincerely, David -- David Sarrut, Phd Directeur de recherche CNRS CREATIS, UMR CNRS 5220, Inserm U 1044 Centre de lutte contre le cancer L?on B?rard 28 rue La?nnec, 69373 Lyon cedex 08 Tel : 04 78 78 51 51 / 06 74 72 05 42 <a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a> _________________________________ "2 + 2 = 5, for extremely large values of 2" _________________________________ -------------- next part -------------- An HTML attachment was scrubbed... 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