<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:12pt"><div><span>I understood your mean ;)</span></div><div style="color: rgb(0, 0, 0); font-size: 16px; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; background-color: transparent; font-style: normal;"><span>Babak</span></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 12pt;"> <div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> On Wednesday, April 16, 2014 7:18 PM, Simon Stute <gate.stute@gmail.com> wrote:<br> </font> </div> <div class="y_msg_container"><div id="yiv9274064008"><div><div dir="ltr"><div>I
obviously talked about "pieces" and not "peaces" ;-)<br clear="none"></div>Simon<br clear="none"></div><div class="yiv9274064008yqt0013988057" id="yiv9274064008yqt58216"><div class="yiv9274064008gmail_extra"><br clear="none"><br clear="none"><div class="yiv9274064008gmail_quote">On Wed, Apr 16, 2014 at 4:36 PM, Simon Stute <span dir="ltr"><<a rel="nofollow" shape="rect" ymailto="mailto:gate.stute@gmail.com" target="_blank" href="mailto:gate.stute@gmail.com">gate.stute@gmail.com</a>></span> wrote:<br clear="none">
<blockquote class="yiv9274064008gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div dir="ltr"><div>Please read carefully the cluster section <a rel="nofollow" shape="rect" target="_blank" href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:How_to_run_Gate#Cluster_mode">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V6.2:How_to_run_Gate#Cluster_mode</a><br clear="none">
</div>You have to split your macro using the gjs program : if you can use 128 cores for example, split it into 128 peaces.<br clear="none">Then submit these peaces to the cluster: that part is depending on your cluster, so you have to build it on yourself (ask to the person in charge of your cluster).<br clear="none">
Once it is finished, just merge the output files from all peaces.<span class="yiv9274064008HOEnZb"><font color="#888888"><br clear="none"><br clear="none">Simon<br clear="none"></font></span></div><div class="yiv9274064008HOEnZb"><div class="yiv9274064008h5"><div class="yiv9274064008gmail_extra"><br clear="none"><br clear="none"><div class="yiv9274064008gmail_quote">
On Wed, Apr 16, 2014 at 4:23 PM, Ba Es <span dir="ltr"><<a rel="nofollow" shape="rect" ymailto="mailto:begate@ymail.com" target="_blank" href="mailto:begate@ymail.com">begate@ymail.com</a>></span> wrote:<br clear="none">
<blockquote class="yiv9274064008gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div><div style="font-size: 12pt; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;"><div>
<span>Dear Simon,</span></div><div style="font-style: normal; font-size: 16px; background-color: transparent; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;"><span>Thanks for your help. my problem is that how can I build the submission script adapted for our rock cluster?</span></div>
<div style="font-style: normal; font-size: 16px; background-color: transparent; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;"><span>I install GATE 6.1 on frontend as said in <a rel="nofollow" shape="rect" target="_blank" href="http://wiki.opengatecollaboration.org/index.php/New_Compilation_Procedure">http://wiki.opengatecollaboration.org/index.php/New_Compilation_Procedure</a>, then I copy all necessary lib file to
others nods, and then check that all the CPU individually can run GATE.</span></div><div style="font-style: normal; font-size: 16px; background-color: transparent; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;">
now what can I must do for parallel computing?</div><div><div><div style="display:block;"> <div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 12pt;">
<div style="font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif; font-size: 12pt;"> <div dir="ltr"> <font face="Arial"> On Wednesday, April 16, 2014 12:42 PM, Simon Stute <<a rel="nofollow" shape="rect" ymailto="mailto:gate.stute@gmail.com" target="_blank" href="mailto:gate.stute@gmail.com">gate.stute@gmail.com</a>> wrote:<br clear="none">
</font> </div> <div><div><div><div dir="ltr"><div><div><div><div><div>Hi,<br clear="none"><br clear="none">You can run Gate on all type of clusters.<br clear="none"></div>The cluster tools provided help to split your macro in many pieces to be sent to the different computation units of your cluster.<br clear="none">
</div>When it is said that supported platforms are "X, Y and Z", it means that the cluster tool can generate the submission script adapted for your platform is you use one of them.<br clear="none"></div>On another cluster platform, the cluster tools will still provide you the essential which is an automatic splitting of your macro and the ability to merge root files with coherent event IDs.<br clear="none">
</div>You will just have to build the submission script adapted for your rock cluster on your own, that's all.<br clear="none"></div><br clear="none">Simon<br clear="none"></div><div><br clear="none"><br clear="none">
<div>On Wed, Apr 16, 2014 at 8:14 AM, Ba Es <span dir="ltr"><<a rel="nofollow" shape="rect" ymailto="mailto:begate@ymail.com" target="_blank" href="mailto:begate@ymail.com">begate@ymail.com</a>></span> wrote:<br clear="none">
<blockquote style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div><div><div style="font-size: 12pt; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;">
<div>
Dear GATE user,</div><div>According to GATE user guide, the supported platforms for cluster computing of GATE are:</div><div style="margin-top: 0.4em; margin-bottom: 0.5em; line-height: 19.046875px; font-family: sans-serif; font-size: 13px;">
openMosix, openPBS, Condor and Xgrid.</div><div><span style="font-size:12pt;">we have a rocks cluster in our lab:</span><br clear="none"></div><div><span style="font-size:12pt;"><a rel="nofollow" shape="rect" target="_blank" href="http://www.rocksclusters.org/wordpress/">www.rocksclusters.org | Rocks Website</a><br clear="none">
</span></div><div style="width: 450px; font-family: Georgia, Times, 'Times New Roman', serif;"><table style="width:450px;height:60px;margin-top:5px;margin-bottom:5px;display:block;" cellpadding="0" cellspacing="0"><tbody><tr><td colspan="6" rowspan="1" style="height:1px;background-color:#e5e5e5;"><div style="min-height:1px;background-color:#e5e5e5;"></div></td></tr><tr><td colspan="1" rowspan="2" style="width:1px;background-color:#e5e5e5;"><div style="width:1px;background-color:#e5e5e5;">
</div></td><td colspan="1" rowspan="2" style="vertical-align:middle;width:58px;height:58px;background-color:#000000;"><div align="center" style="width:58px;"><a rel="nofollow" shape="rect" target="_blank" href="http://www.rocksclusters.org/wordpress/" style="text-decoration:none!important;color:#000000!important;"><img alt="image" src="http://www.rocksclusters.org/wordpress/wp-content/uploads/2011/05/Tutorial-Basic.png" style="display:block;margin:auto;" height="30" width="58"></a></div>
</td><td colspan="1" rowspan="2" style="width:1px;background-color:#e5e5e5;"><div style="width:1px;background-color:#e5e5e5;"></div></td><td colspan="2" rowspan="1" style="width: 100%; vertical-align: middle; font-family: Georgia, Times, 'Times New Roman', serif;">
<div style="line-height:16.5px;width:389px;min-height:34px;"><div style="word-wrap:break-word;padding:5px 20px 0px 9px;"><span></span><span></span><a rel="nofollow" shape="rect" target="_blank" href="http://www.rocksclusters.org/wordpress/" style="text-decoration:none!important;color:#000000!important;"><span style="margin:0;font-weight:normal;font-size:13px;line-height:18px;max-height:19px;color:#000000;overflow:hidden!important;display:inline-block;">www.rocksclusters.org | Rocks Website</span></a><div style="font-size: 11px; line-height: 15px; color: rgb(153, 153, 153); max-height: 16px; font-family: Arial, 'Helvetica Neue', Helvetica, sans-serif; overflow: hidden;">
The latest update of Rocks codename Emerald Boa is now released. </div></div></div></td><td colspan="1" rowspan="2" style="width:1px;background-color:#e5e5e5;"><div style="width:1px;background-color:#e5e5e5;"></div></td></tr><tr><td colspan="1" rowspan="1" style="width: 100%; vertical-align: middle; font-family: Arial, 'Helvetica Neue', Helvetica, sans-serif;">
<div style="font-size:0pt;padding:1px 20px 1px 10px;"><a rel="nofollow" shape="rect" target="_blank" href="http://www.rocksclusters.org/wordpress/" style="text-decoration:none!important;"><span style="display:inline-block;line-height:11px;max-width:289px;min-width:229px;overflow:hidden;max-height:13px;"><span style="vertical-align:middle;font-size:9px;line-height:11px;color:#999999;">View on <span style="font-weight:bold;">www.rocksclusters.org</span></span></span></a></div>
</td><td colspan="1" rowspan="1" style="vertical-align: middle; width: 100px; font-family: Arial, 'Helvetica Neue', Helvetica, sans-serif;"><div style="padding:2px 20px 4px 0px;max-width:100px;min-width:80px;overflow:hidden;text-align:right;line-height:11px;max-height:13px;font-size:0pt;">
<span style="vertical-align:middle;font-size:9px;line-height:11px;color:#999999;">Preview by Yahoo</span></div></td></tr><tr><td colspan="6" rowspan="1" style="height:1px;background-color:#e5e5e5;"><div style="min-height:1px;background-color:#e5e5e5;">
</div></td></tr></tbody></table></div><div> </div><div>Anyone know how can we run GATE on this cluster?</div><div>I Install GATE6.1 on it.</div><div>Thanks</div><div><br clear="none"></div><div style="font-style: normal; font-size: 16px; background-color: transparent; font-family: HelveticaNeue, 'Helvetica Neue', Helvetica, Arial, 'Lucida Grande', sans-serif;">
Babak</div></div></div></div><br clear="none">_______________________________________________<br clear="none">
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