<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 TRANSITIONAL//EN"> <HTML> <HEAD> <META HTTP-EQUIV="Content-Type" CONTENT="text/html; CHARSET=UTF-8"> <META NAME="GENERATOR" CONTENT="GtkHTML/4.2.2"> </HEAD> <BODY> Alternatively, if you set the root environment variables beforehand e.g. by source /yourpathToRoot/bin/thisroot.sh Gate should already know the correct path to use. Cheers, Hermann On Tue, 2014-01-21 at 23:15 +0000, Pedro Correia wrote: <BLOCKQUOTE TYPE=CITE> Have you tried to change </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> ROOTCINT_EXECUTABLE /opt/simulations/root/cint/cint/ </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> to </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> ROOTCINT_EXECUTABLE /opt/simulations/root/bin/rootcint </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> ? </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> Best regards, Pedro </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> No dia 21/01/2014, às 22:50, Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> escreveu: </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> I finally made Geant4 installed but i have problems with Gate. ______________________________________________________________________________________ CMAKE_BACKWARDS_COMPATIBILITY 2.4 CMAKE_BUILD_TYPE Release CMAKE_INSTALL_PREFIX /usr/local EXECUTABLE_OUTPUT_PATH GATE_ANALYSIS_USE_FILE ON GATE_ANALYSIS_USE_GENERAL ON GATE_USE_ECAT7 OFF GATE_USE_LMF OFF GATE_USE_OPTICAL ON GATE_USE_OWN_CLHEP ON GATE_USE_ROOT ON Geant4_DIR /usr/local/lib/Geant4-9.5.2 LIBRARY_OUTPUT_PATH ROOTCINT_EXECUTABLE /opt/simulations/root/cint/cint/ WITH_GEANT4_UIVIS ON ROOTCINT_EXECUTABLE: Path to a program. Press [enter] to edit option Press [c] to configure Press [h] for help Press [q] to quit without generating Press [t] to toggle advanced mode (Currently Off) __________________________________________________________________________________________ Root Not found ! Please install Root and make it available in PATH CMake Error at cmake-modules/FindCLHEP.cmake:183 (file): file Internal CMake error when trying to open file: /opt/simulations/<A HREF="http://2.1.1.0/CLHEP/CLHEP/Units/defs.h">2.1.1.0/CLHEP/CLHEP/Units/defs.h</A> for reading. Call Stack (most recent call first): CMakeLists.txt:73 (FIND_PACKAGE) </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> What path to ROOT sholud i give? </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> Thanks in advance </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> Pozdrawiam Michał Knap </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> 2014/1/21 Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> Pozdrawiam Michał Knap </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> ---------- Forwarded message ---------- From: Mojca Miklavec <<A HREF="mailto:mojca.miklavec.lists@gmail.com">mojca.miklavec.lists@gmail.com</A>> Date: 2014/1/21 Subject: Re: [Gate-users] Geant4.9.5.p02 problem with the installation using cmake To: Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> On Tue, Jan 21, 2014 at 3:28 PM, Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> wrote: > Yes. This is it. Thanks a lot for Your help. </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> Hi, Since I only wrote this off-list, I believe you should also let the mailing list know how you solved the problem. Mojca </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> > Pozdrawiam > Michał Knap > > > 2014/1/21 Mojca Miklavec <<A HREF="mailto:mojca.miklavec.lists@gmail.com">mojca.miklavec.lists@gmail.com</A>> >> >> What exactly did you set for CMAKE_INSTALL_PREFIX? Did you forget to >> use the leading slash by any chance? >> >> Mojca >> >> >> On Tue, Jan 21, 2014 at 3:07 PM, Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> >> wrote: >> > Thanks a lot. I solved problems with CLHEP (i hope so) but no i have >> > this >> > while configuring: >> > >> > >> > CMake Error at >> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:512 >> > (file): >> > file RELATIVE_PATH must be passed a full path to the directory: >> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> > Call Stack (most recent call first): >> > CMakeLists.txt:116 (include) >> > >> > >> > CMake Error at >> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:520 >> > (file): >> > file RELATIVE_PATH must be passed a full path to the directory: >> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> > Call Stack (most recent call first): >> > CMakeLists.txt:116 (include) >> > >> > >> > CMake Error at >> > cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:533 >> > (file): >> > file RELATIVE_PATH must be passed a full path to the directory: >> > opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> > >> > >> > Errors occurred during the last pass >> > >> > CMake Version 2.8.7 >> > Press [e] to exit help >> > >> > >> > >> > Thanks in advance. >> > >> > Pozdrawiam >> > Michał Knap >> > >> > >> > 2014/1/21 David Sarrut <<A HREF="mailto:David.Sarrut@creatis.insa-lyon.fr">David.Sarrut@creatis.insa-lyon.fr</A>> >> >> >> >> Hello, >> >> >> >> - try a clean installation of Geant4 in a (empty) folder different from >> >> the source one ("in-source build detected"), be sure to restart from >> >> scratch >> >> (even the initial g4 source). >> >> >> >> - for the variable CLHEP_LIBRARY you need to provide the path of the >> >> *library* not the folder, something like : >> >> /opt/simulations/<A HREF="http://2.1.1.0/CLHEP/lib/libCLHEP-2.1.1.0.so">2.1.1.0/CLHEP/lib/libCLHEP-2.1.1.0.so</A> >> >> >> >> - it is not possible to use clhep delivered with geant4 : you have to >> >> use >> >> your own version ("system" clhep), and indicate the path, both to >> >> geant4 >> >> then to Gate. This is because the clhep delivered with Geant4 is only a >> >> subset of clhep, and Gate need functions in clhep that are not >> >> contained in >> >> this subset. >> >> >> >> Sincerely, >> >> David >> >> >> >> >> >> >> >> >> >> On Mon, Jan 20, 2014 at 11:16 PM, Michal Knap <<A HREF="mailto:michal.knap@gmail.com">michal.knap@gmail.com</A>> >> >> wrote: >> >>> >> >>> I did as You told. >> >>> >> >>> root@mknap:/opt/simulations/geant4.9.5.p02_build# ccmake >> >>> ../geant4.9.5.p02 -DGEANT4_USE_SYSTEM_CLHEP=OFF >> >>> >> >>> >> >>> ________________________________________________________________________________________ >> >>> CLHEP_INCLUDE_DIR >> >>> /opt/simulations/<A HREF="http://2.1.1.0/CLHEP">2.1.1.0/CLHEP</A> >> >>> CLHEP_LIBRARY >> >>> /opt/simulations/<A HREF="http://2.1.1.0/CLHEP/bin">2.1.1.0/CLHEP/bin</A> >> >>> CMAKE_BUILD_TYPE Release >> >>> CMAKE_INSTALL_PREFIX >> >>> opt/simulations/geant4.9.5.p02_install >> >>> GEANT4_INSTALL_DATA ON >> >>> GEANT4_USE_G3TOG4 OFF >> >>> GEANT4_USE_GDML OFF >> >>> GEANT4_USE_INVENTOR OFF >> >>> GEANT4_USE_OPENGL_X11 ON >> >>> GEANT4_USE_QT ON >> >>> GEANT4_USE_RAYTRACER_X11 OFF >> >>> GEANT4_USE_XM OFF >> >>> QT_QMAKE_EXECUTABLE >> >>> /usr/bin/qmake >> >>> >> >>> >> >>> >> >>> ______________________________________________________________________________ >> >>> CMake Error at >> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:512 (file): >> >>> file RELATIVE_PATH must be passed a full path to the directory: >> >>> >> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> >>> >> >>> Call Stack (most recent call first): >> >>> CMakeLists.txt:116 (include) >> >>> >> >>> >> >>> >> >>> CMake Error at >> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:520 (file): >> >>> file RELATIVE_PATH must be passed a full path to the directory: >> >>> >> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> >>> >> >>> Call Stack (most recent call first): >> >>> CMakeLists.txt:116 (include) >> >>> >> >>> >> >>> >> >>> CMake Error at >> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:533 (file): >> >>> file RELATIVE_PATH must be passed a full path to the directory: >> >>> >> >>> opt/simulations/geant4.9.5.p02_install/share/Geant4-9.5.2/geant4make >> >>> >> >>> Call Stack (most recent call first): >> >>> CMakeLists.txt:116 (include) >> >>> >> >>> >> >>> >> >>> CMake Error at >> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:592 (file): >> >>> file RELATIVE_PATH must be passed a full path to the directory: >> >>> opt/simulations/geant4.9.5.p02_install/bin >> >>> >> >>> Call Stack (most recent call first): >> >>> CMakeLists.txt:116 (include) >> >>> >> >>> >> >>> >> >>> CMake Error at >> >>> cmake/Modules/Geant4ToolchainBackwardCompatibility.cmake:601 (file): >> >>> >> >>> >> >>> Errors occurred during the last pass >> >>> >> >>> CMake Version 2.8.7 >> >>> Press [e] to exit help >> >>> >> >>> >> >>> Still something wrong. >> >>> Can You help? >> >>> >> >>> Pozdrawiam >> >>> Michał Knap >> >>> >> >>> >> >>> 2014/1/20 Mojca Miklavec <<A HREF="mailto:mojca.miklavec.lists@gmail.com">mojca.miklavec.lists@gmail.com</A>> >> >>>> >> >>>> On Mon, Jan 20, 2014 at 10:42 PM, Michal Knap wrote: >> >>>> > I did as You told and i get this: >> >>>> > >> >>>> > CMake Error at >> >>>> > /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:91 >> >>>> > (MESSAGE): >> >>>> > Could NOT find CLHEP: >> >>>> > >> >>>> > CLHEP Header Path Not Found >> >>>> > >> >>>> > CLHEP Library Not Found >> >>>> > >> >>>> > Incompatible versions, (found) < 2.1.0.1(required) >> >>>> > >> >>>> > (missing: CLHEP_LIBRARY CLHEP_INCLUDE_DIR) (Required is at >> >>>> > least >> >>>> > version "2.1.0.1") >> >>>> > Call Stack (most recent call first): >> >>>> > >> >>>> > >> >>>> > /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:252 >> >>>> > (_FPHSA_FAILURE_MESSAGE) >> >>>> > cmake/Modules/FindCLHEP.cmake:238 >> >>>> > (find_package_handle_standard_args) >> >>>> > cmake/Modules/Geant4OptionalComponents.cmake:41 (find_package) >> >>>> > CMakeLists.txt:79 (include) >> >>>> > >> >>>> > What is wrong this time? >> >>>> >> >>>> I use the following options to compile with system's clhep (or a >> >>>> local >> >>>> installation of CLHEP that may be located anywhere as long as the >> >>>> path >> >>>> is provided): >> >>>> >> >>>> -DGEANT4_USE_SYSTEM_CLHEP=ON \ >> >>>> -DCLHEP_CONFIG_EXECUTABLE=${prefix}/bin/clhep-config \ >> >>>> -DCLHEP_INCLUDE_DIR=${prefix}/include \ >> >>>> -DCLHEP_LIBRARY=${prefix}/lib/libCLHEP.dylib >> >>>> >> >>>> (where you need to replace ${prefix} with the actual place where you >> >>>> have CLHEP installed). >> >>>> >> >>>> The following is not true: >> >>>> > System clhep means you have your own clhep. >> >>>> >> >>>> This used to be the case in Gate a while ago (not in Geant4), but >> >>>> Gate >> >>>> fixed this recently as well. >> >>>> >> >>>> If you want to build the built-in CLHEP, you actually need to run >> >>>> [c]cmake ../geant4.9.5-p02 -DGEANT4_USE_SYSTEM_CLHEP=OFF >> >>>> or set that variable in the installer. But last time I tried, the >> >>>> built-in CLHEP from Geant4 wasn't sufficient for Gate for some >> >>>> reason. >> >>>> >> >>>> It doesn't help you to export PATH and LD_LIBRARY_PATH. You need to >> >>>> set the proper variables either in ccmake or as command-line >> >>>> arguments >> >>>> to cmake. >> >>>> >> >>>> Mojca >> >>> >> >>> >> >>> >> >>> _______________________________________________ >> >>> Gate-users mailing list >> >>> <A HREF="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</A> >> >>> <A HREF="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</A> >> >> >> >> >> >> >> >> >> >> -- >> >> David Sarrut, Phd >> >> Directeur de recherche CNRS >> >> CREATIS, UMR CNRS 5220, Inserm U 1044 >> >> Centre de lutte contre le cancer Léon Bérard >> >> 28 rue Laënnec, 69373 Lyon cedex 08 >> >> Tel : 04 78 78 51 51 / 06 74 72 05 42 >> >> <A HREF="http://www.creatis.insa-lyon.fr/~dsarrut">http://www.creatis.insa-lyon.fr/~dsarrut</A> >> >> _________________________________ >> >> "2 + 2 = 5, for extremely large values of 2" >> >> _________________________________ >> > >> > > > </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <BLOCKQUOTE TYPE=CITE> _______________________________________________ Gate-users mailing list <A HREF="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</A> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users </BLOCKQUOTE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> </BLOCKQUOTE> <BLOCKQUOTE TYPE=CITE> <PRE> _______________________________________________ Gate-users mailing list <A HREF="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</A> <A HREF="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</A> </PRE> </BLOCKQUOTE> <TABLE CELLSPACING="0" CELLPADDING="0" WIDTH="100%"> <TR> <TD> <PRE> -- ------------- DI Hermann Fuchs Christian Doppler Laboratory for Medical Radiation Research for Radiation Oncology Department of Radiation Oncology Medical University Vienna Währinger Gürtel 18-20 A-1090 Wien Tel. + 43 / 1 / 40 400 7271 Mail. <A HREF="mailto:hermann.fuchs@meduniwien.ac.at">hermann.fuchs@meduniwien.ac.at</A> </PRE> </TD> </TR> </TABLE> </BODY> </HTML>