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<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>Further, saving the data as .txt or .pgm with imagej
and reading with imageReader results in</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>nx ny nz: 46 -1274561220
-1273342912</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>dx dy dz: -4.69221e-58 -2.44937e-57
-4.69221e-58</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012></SPAN></FONT> </DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>and too small dimensions for Solid:</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>hx, hy, hz = -1.07921e-56, -1.22468e-57,
-2,3461e-58</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012></SPAN></FONT> </DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>Imagej itself says the file has 326 slices, which are
404x401 (161.60x160.40 mm).</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012></SPAN></FONT> </DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>Again, if you have any hints or suggestions, they are
very much welcome.</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012></SPAN></FONT> </DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>Best Regards,</SPAN></FONT></DIV>
<DIV dir=ltr align=left><FONT face=Arial color=#0000ff size=2><SPAN
class=608503112-26102012>Jukka</SPAN></FONT></DIV><BR>
<DIV class=OutlookMessageHeader lang=fi dir=ltr align=left>
<HR tabIndex=-1>
<FONT face=Tahoma size=2><B>Lähettäjä:</B>
gate-users-bounces@lists.opengatecollaboration.org
[mailto:gate-users-bounces@lists.opengatecollaboration.org] <B>Puolesta
</B>Järvinen Jukka Ilari<BR><B>Lähetetty:</B> 26. lokakuuta 2012
12:00<BR><B>Vastaanottaja:</B>
gate-users@lists.opengatecollaboration.org<BR><B>Aihe:</B> Re: [Gate-users]
Interfile input<BR></FONT><BR></DIV>
<DIV></DIV>
<DIV dir=ltr align=left><SPAN class=179114908-26102012><FONT face=Arial
color=#0000ff size=2>Hi,</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=179114908-26102012><FONT face=Arial
color=#0000ff size=2></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=179114908-26102012><FONT face=Arial
color=#0000ff size=2>I am trying to input an interfile (named m000-Testi) and
Gate returns the error below. I have created the interfile with xmedcon and have
tried all pixel types (default, uint8 and int16), both endians and writing to
single file. </FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=179114908-26102012><FONT face=Arial
color=#0000ff size=2></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=179114908-26102012>
<DIV>Call VoxelParameterized::<WBR>InsertReader</DIV>
<DIV> Range Translator</DIV>
<DIV>', assuming default BIGENDIAN'LITTLEENDIAN</DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT><BR></DIV>
<DIV>'nrecognised type name 'signed integer</DIV>
<DIV> Header read from 'm000-Testi.h33'</DIV>
<DIV>'Data file name 'm000-Testi.i33</DIV>
<DIV> Nb of planes: 326</DIV>
<DIV> Nb of pixels per plane: 401 401</DIV>
<DIV> Pixel size: 0.4 0.4</DIV>
<DIV> Slice thickness: 1</DIV>
<DIV> Matrix size: 160.4
160.4</DIV>
<DIV> Data type: </DIV>
<DIV> Data byte order:<SPAN> </SPAN>BIGENDIAN</DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT><BR></DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT><BR></DIV>
<DIV>'!ror: Could not open header file 'm000-Testi.i33</DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT> </DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN
class=179114908-26102012>Currently my code looks like this:</SPAN></FONT></DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT> </DIV>
<DIV>
<DIV>/gate/world/daughters/name Polovi </DIV>
<DIV>/gate/world/daughters/insert parameterizedBoxMatrix</DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT> </DIV>
<DIV>/gate/Polovi/geometry/<WBR>insertReader interfile </DIV>
<DIV>/gate/Polovi/interfileReader/<WBR>insertTranslator range </DIV>
<DIV>/gate/Polovi/interfileReader/<WBR>rangeTranslator/readTable
Range_atn.dat </DIV>
<DIV>/gate/Polovi/interfileReader/<WBR>rangeTranslator/describe 1 </DIV>
<DIV>/gate/Polovi/interfileReader/<WBR>readFile m000-Testi.h33 </DIV><FONT
face=Arial color=#0000ff size=2></FONT></DIV>
<DIV> </DIV>
<DIV>
<DIV><SPAN class=179114908-26102012></SPAN><FONT face=Arial><FONT
color=#0000ff><FONT size=2>T<SPAN class=179114908-26102012>he Range_atn.dat
looks like this:</SPAN></FONT></FONT></FONT><BR></DIV>
<DIV>
<DIV>4</DIV>
<DIV>1 Air false 0.0 0.0 0.0 1.0</DIV>
<DIV>2 Muscle true 0.5 0.1 0.0 0.5</DIV>
<DIV>3 RibBone true 1.0 1.0 1.0 1.0</DIV>
<DIV>4 Cartilage true 0.2 0.1 0.1 0.8</DIV></DIV></DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT> </DIV>
<DIV><FONT face=Arial color=#0000ff size=2><SPAN class=179114908-26102012>If you
have any suggestions as to where the error originates from or can spot it in the
code, please enlighten me.</SPAN></FONT></DIV>
<DIV><FONT face=Arial color=#0000ff size=2></FONT> </DIV>
<DIV><SPAN class=179114908-26102012><FONT face=Arial color=#0000ff size=2>Best
Regards,</FONT></SPAN></DIV>
<DIV><SPAN class=179114908-26102012><FONT face=Arial color=#0000ff size=2>Jukka
Järvinen</FONT></SPAN></DIV></SPAN></DIV><BR>
<DIV class=OutlookMessageHeader lang=fi dir=ltr align=left>
<HR tabIndex=-1>
<FONT face=Tahoma size=2><B>Lähettäjä:</B> Järvinen Jukka Ilari
<BR><B>Lähetetty:</B> 23. lokakuuta 2012 9:28<BR><B>Vastaanottaja:</B>
'gate-users@lists.opengatecollaboration.org'<BR><B>Aihe:</B> Interfile
input<BR></FONT><BR></DIV>
<DIV></DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial
size=2>Hi,</FONT></SPAN></DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial size=2>How do I use
interfile-reader in Gate? I am using vGate 6.2 and would like to import a DICOM
ct-data set to use as world and daughters. If I understand correctly, that is
possible after conversion with the reader.</FONT></SPAN></DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial size=2>Thanks a lot for
your answers!</FONT></SPAN></DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial size=2>Best
regards,</FONT></SPAN></DIV>
<DIV><SPAN class=736111706-23102012><FONT face=Arial size=2>Jukka
Järvinen</FONT></SPAN></DIV></BODY></HTML>