<div>Hello,</div><div><br></div><div>When I run benchmark for PET with enabled visualisation on Ubuntu, I get the error listed below. Is this problem caused by the lack of any library? I would be grateful for any help. I don't have this error when visualisation is disabled.</div> <div><br></div><div>Best regards,</div><div>Paweł Kowalski</div><div><br></div><div>[G4] </div><div>[G4] *************************************************************</div><div>[G4] Geant4 version Name: geant4-09-05-patch-01 (20-March-2012)</div> <div>[G4] Copyright : Geant4 Collaboration</div><div>[G4] Reference : NIM A 506 (2003), 250-303</div><div>[G4] WWW : <a href="http://cern.ch/geant4">http://cern.ch/geant4</a></div> <div>[G4] *************************************************************</div><div>[G4] </div><div>[Core-0] Initialization of geometry</div><div>[Core-0] Initialization of physics</div><div>[Core-0] Initialization of actors</div> <div>[Core-0] </div><div>[Core-0] **********************************************************************</div><div>[Core-0] GATE version name: gate_v6.2 </div><div>[Core-0] Copyright : OpenGATE Collaboration </div> <div>[Core-0] Reference : Phys. Med. Biol. 49 (2004) 4543-4561 </div><div>[Core-0] Reference : Phys. Med. Biol. 56 (2011) 881-901 </div><div>[Core-0] WWW : <a href="http://www.opengatecollaboration.org">http://www.opengatecollaboration.org</a> </div> <div>[Core-0] **********************************************************************</div><div>[Core-0] </div><div>[Core-0] Starting macro benchPET.mac</div><div><br></div><div> *** Break *** segmentation violation</div> <div> <br></div><div><br></div><div><br></div><div>===========================================================</div><div>There was a crash (#8 0xb532860b in SigHandler(ESignals) () from /opt/root/lib/libCore.so).</div><div>This is the entire stack trace of all threads:</div> <div>===========================================================</div><div><br></div><div>Thread 5 (Thread 0xaf92db40 (LWP 11506)):</div><div>#0 0xb77ae424 in __kernel_vsyscall ()</div><div>#1 0xb427d800 in poll () from /lib/libc.so.6</div> <div>#2 0xb2411d0b in g_poll () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#3 0xb240406e in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#4 0xb240452b in g_main_loop_run () from /lib/i386-linux-gnu/libglib-2.0.so.0</div> <div>#5 0xb09b4134 in ?? () from /usr/lib/i386-linux-gnu/gio/modules/libdconfsettings.so</div><div>#6 0xb24288f3 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#7 0xb434dd4c in start_thread () from /lib/i386-linux-gnu/libpthread.so.0</div> <div>#8 0xb428bf4e in clone () from /lib/libc.so.6</div><div><br></div><div>Thread 4 (Thread 0xaefffb40 (LWP 11507)):</div><div>#0 0xb77ae424 in __kernel_vsyscall ()</div><div>#1 0xb427d800 in poll () from /lib/libc.so.6</div> <div>#2 0xb2411d0b in g_poll () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#3 0xb240406e in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#4 0xb240452b in g_main_loop_run () from /lib/i386-linux-gnu/libglib-2.0.so.0</div> <div>#5 0xb086ac1a in ?? () from /usr/lib/i386-linux-gnu/libgio-2.0.so.0</div><div>#6 0xb24288f3 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#7 0xb434dd4c in start_thread () from /lib/i386-linux-gnu/libpthread.so.0</div> <div>#8 0xb428bf4e in clone () from /lib/libc.so.6</div><div><br></div><div>Thread 3 (Thread 0xae5ffb40 (LWP 11508)):</div><div>#0 0xb77ae424 in __kernel_vsyscall ()</div><div>#1 0xb4351d13 in pthread_cond_timedwait</div> <div><br></div><div>GLIBC_2.3.2 () from /lib/i386-linux-gnu/libpthread.so.0</div><div>#2 0xb2444bf0 in g_cond_wait_until () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#3 0xb23d74e9 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div> <div>#4 0xb23d7d0e in g_async_queue_timeout_pop () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#5 0xb24291cc in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div><div>#6 0xb24288f3 in ?? () from /lib/i386-linux-gnu/libglib-2.0.so.0</div> <div>#7 0xb434dd4c in start_thread () from /lib/i386-linux-gnu/libpthread.so.0</div><div>#8 0xb428bf4e in clone () from /lib/libc.so.6</div><div><br></div><div>Thread 2 (Thread 0xadbffb40 (LWP 11509)):</div><div>#0 0xb77ae424 in __kernel_vsyscall ()</div> <div>#1 0xb4284f71 in select () from /lib/libc.so.6</div><div>#2 0xb31f8e26 in ?? () from /usr/lib/i386-linux-gnu/libQtCore.so.4</div><div>#3 0xb3109de0 in ?? () from /usr/lib/i386-linux-gnu/libQtCore.so.4</div><div>#4 0xb434dd4c in start_thread () from /lib/i386-linux-gnu/libpthread.so.0</div> <div>#5 0xb428bf4e in clone () from /lib/libc.so.6</div><div><br></div><div>Thread 1 (Thread 0xb22e9740 (LWP 11505)):</div><div>#0 0xb77ae424 in __kernel_vsyscall ()</div><div>#1 0xb4254b7b in waitpid () from /lib/libc.so.6</div> <div>#2 0xb41dc003 in ?? () from /lib/libc.so.6</div><div>#3 0xb41dc4ba in system () from /lib/libc.so.6</div><div>#4 0xb4355e2b in system () from /lib/i386-linux-gnu/libpthread.so.0</div><div>#5 0xb532140b in TUnixSystem::Exec(char const*) () from /opt/root/lib/libCore.so</div> <div>#6 0xb53259d0 in TUnixSystem::StackTrace() () from /opt/root/lib/libCore.so</div><div>#7 0xb53284f7 in TUnixSystem::DispatchSignals(ESignals) () from /opt/root/lib/libCore.so</div><div>#8 0xb532860b in SigHandler(ESignals) () from /opt/root/lib/libCore.so</div> <div>#9 0xb531f642 in sighandler(int) () from /opt/root/lib/libCore.so</div><div>#10 <signal handler called></div><div>#11 0xb3231d0a in QObject::blockSignals(bool) () from /usr/lib/i386-linux-gnu/libQtCore.so.4</div> <div>#12 0xb7681eb4 in G4OpenGLQtViewer::addTreeElement(G4String, std::vector<std::pair<std::string, std::pair<unsigned int, unsigned int> >, std::allocator<std::pair<std::string, std::pair<unsigned int, unsigned int> > > >) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#13 0xb76835cf in G4OpenGLStoredQtSceneHandler::ExtraPOProcessing(unsigned int) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#14 0xb765bb50 in G4OpenGLStoredSceneHandler::AddPrimitivePreamble(G4Visible const&) [clone .part.189] () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#15 0xb765be91 in G4OpenGLStoredSceneHandler::AddPrimitive(G4Polyhedron const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#16 0xb75b2dc7 in G4VSceneHandler::RequestPrimitives(G4VSolid const&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#17 0xb765c1bb in G4OpenGLStoredSceneHandler::RequestPrimitives(G4VSolid const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#18 0xb75b154a in G4VSceneHandler::AddSolid(G4Box const&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#19 0xb76544b3 in G4OpenGLSceneHandler::AddSolid(G4Box const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#20 0xb5b4c477 in G4Box::DescribeYourselfTo(G4VGraphicsScene&) const () from /opt/geant4.9.5.p01-install/lib/libG4geometry.so</div> <div>#21 0xb75357c3 in G4PhysicalVolumeModel::DescribeSolid(HepGeom::Transform3D const&, G4VSolid*, G4VisAttributes const*, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div>#22 0xb7536aa6 in G4PhysicalVolumeModel::DescribeAndDescend(G4VPhysicalVolume*, int, G4LogicalVolume*, G4VSolid*, G4Material*, HepGeom::Transform3D const&, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div> <div>#23 0xb753722a in G4PhysicalVolumeModel::VisitGeometryAndGetVisReps(G4VPhysicalVolume*, int, HepGeom::Transform3D const&, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div> #24 0xb75382de in G4PhysicalVolumeModel::DescribeYourselfTo(G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div>#25 0xb75b276b in G4VSceneHandler::ProcessScene(G4VViewer&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#26 0xb75b61a2 in G4VViewer::ProcessView() () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div><div>#27 0xb768490d in G4OpenGLStoredQtViewer::ComputeView() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#28 0xb7684ac4 in G4OpenGLStoredQtViewer::paintGL() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#29 0xb3e76c43 in QGLWidget::glDraw() () from /usr/lib/i386-linux-gnu/libQtOpenGL.so.4</div><div>#30 0xb3e764bb in QGLWidget::updateGL() () from /usr/lib/i386-linux-gnu/libQtOpenGL.so.4</div> <div>#31 0xb7683d81 in G4OpenGLStoredQtViewer::updateQWidget() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#32 0xb7683d2f in G4OpenGLStoredQtViewer::DrawView() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#33 0xb75e8316 in G4VisCommandSceneHandlerAttach::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div><div>#34 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#35 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#36 0xb75bfb14 in G4VisCommandDrawVolume::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#37 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#38 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#39 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#40 0xb58fefd5 in G4UIbatch::ExecCommand(G4String const&) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#41 0xb59002f7 in G4UIbatch::SessionStart() () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#42 0xb592093e in G4UImanager::ExecuteMacroFile(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#43 0xb5919b19 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#44 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#45 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#46 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#47 0xb58fefd5 in G4UIbatch::ExecCommand(G4String const&) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#48 0xb59002f7 in G4UIbatch::SessionStart() () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#49 0xb592093e in G4UImanager::ExecuteMacroFile(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#50 0xb5919b19 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#51 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#52 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#53 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#54 0x080fe95a in main ()</div><div>===========================================================</div> <div><br></div><div><br></div><div>The lines below might hint at the cause of the crash.</div><div>If they do not help you then please submit a bug report at</div><div><a href="http://root.cern.ch/bugs">http://root.cern.ch/bugs</a>. Please post the ENTIRE stack trace</div> <div>from above as an attachment in addition to anything else</div><div>that might help us fixing this issue.</div><div>===========================================================</div><div>#11 0xb3231d0a in QObject::blockSignals(bool) () from /usr/lib/i386-linux-gnu/libQtCore.so.4</div> <div>#12 0xb7681eb4 in G4OpenGLQtViewer::addTreeElement(G4String, std::vector<std::pair<std::string, std::pair<unsigned int, unsigned int> >, std::allocator<std::pair<std::string, std::pair<unsigned int, unsigned int> > > >) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#13 0xb76835cf in G4OpenGLStoredQtSceneHandler::ExtraPOProcessing(unsigned int) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#14 0xb765bb50 in G4OpenGLStoredSceneHandler::AddPrimitivePreamble(G4Visible const&) [clone .part.189] () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#15 0xb765be91 in G4OpenGLStoredSceneHandler::AddPrimitive(G4Polyhedron const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#16 0xb75b2dc7 in G4VSceneHandler::RequestPrimitives(G4VSolid const&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#17 0xb765c1bb in G4OpenGLStoredSceneHandler::RequestPrimitives(G4VSolid const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#18 0xb75b154a in G4VSceneHandler::AddSolid(G4Box const&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#19 0xb76544b3 in G4OpenGLSceneHandler::AddSolid(G4Box const&) () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#20 0xb5b4c477 in G4Box::DescribeYourselfTo(G4VGraphicsScene&) const () from /opt/geant4.9.5.p01-install/lib/libG4geometry.so</div> <div>#21 0xb75357c3 in G4PhysicalVolumeModel::DescribeSolid(HepGeom::Transform3D const&, G4VSolid*, G4VisAttributes const*, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div>#22 0xb7536aa6 in G4PhysicalVolumeModel::DescribeAndDescend(G4VPhysicalVolume*, int, G4LogicalVolume*, G4VSolid*, G4Material*, HepGeom::Transform3D const&, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div> <div>#23 0xb753722a in G4PhysicalVolumeModel::VisitGeometryAndGetVisReps(G4VPhysicalVolume*, int, HepGeom::Transform3D const&, G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div> #24 0xb75382de in G4PhysicalVolumeModel::DescribeYourselfTo(G4VGraphicsScene&) () from /opt/geant4.9.5.p01-install/lib/libG4modeling.so</div><div>#25 0xb75b276b in G4VSceneHandler::ProcessScene(G4VViewer&) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#26 0xb75b61a2 in G4VViewer::ProcessView() () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div><div>#27 0xb768490d in G4OpenGLStoredQtViewer::ComputeView() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#28 0xb7684ac4 in G4OpenGLStoredQtViewer::paintGL() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#29 0xb3e76c43 in QGLWidget::glDraw() () from /usr/lib/i386-linux-gnu/libQtOpenGL.so.4</div><div>#30 0xb3e764bb in QGLWidget::updateGL() () from /usr/lib/i386-linux-gnu/libQtOpenGL.so.4</div> <div>#31 0xb7683d81 in G4OpenGLStoredQtViewer::updateQWidget() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div><div>#32 0xb7683d2f in G4OpenGLStoredQtViewer::DrawView() () from /opt/geant4.9.5.p01-install/lib/libG4OpenGL.so</div> <div>#33 0xb75e8316 in G4VisCommandSceneHandlerAttach::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div><div>#34 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#35 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#36 0xb75bfb14 in G4VisCommandDrawVolume::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4vis_management.so</div> <div>#37 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#38 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#39 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#40 0xb58fefd5 in G4UIbatch::ExecCommand(G4String const&) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#41 0xb59002f7 in G4UIbatch::SessionStart() () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#42 0xb592093e in G4UImanager::ExecuteMacroFile(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#43 0xb5919b19 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#44 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#45 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#46 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#47 0xb58fefd5 in G4UIbatch::ExecCommand(G4String const&) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#48 0xb59002f7 in G4UIbatch::SessionStart() () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#49 0xb592093e in G4UImanager::ExecuteMacroFile(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#50 0xb5919b19 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*, G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#51 0xb590e918 in G4UIcommand::DoIt(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#52 0xb5924e4e in G4UImanager::ApplyCommand(char const*) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div> <div>#53 0xb5925525 in G4UImanager::ApplyCommand(G4String) () from /opt/geant4.9.5.p01-install/lib/libG4intercoms.so</div><div>#54 0x080fe95a in main ()</div><div>===========================================================</div>