<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns="http://www.w3.org/TR/REC-html40"> <head> <meta http-equiv=Content-Type content="text/html; charset=iso-8859-1"> <meta name=Generator content="Microsoft Word 11 (filtered medium)">  <style>  </style>  </head> <body lang=EN-US link=blue vlink=blue> <div class=Section1> Dear All,<o:p></o:p> <o:p> </o:p> I fixed the problem by unzip GATE 5 to a brand new folder, then go to the folder, modify the env_gate.sh, source it, unset G4WORKDIR, and go. �In this way, everything is okay.<o:p></o:p> <o:p> </o:p> Yonggang<o:p></o:p> <o:p> </o:p> <o:p> </o:p> <div> <div class=MsoNormal align=center style='text-align:center'> <hr size=2 width="100%" align=center tabindex=-1> </div> From: Simon Stute [mailto:gate.stute@gmail.com] Sent: Tuesday, August 25, 2009 3:57 AM To: Ida H�ggstr�m Cc: Cui, Yonggang; gate-users@lists.healthgrid.org Subject: Re: [Gate-users] compilation of Gate 5.0.0<o:p></o:p> </div> <o:p> </o:p> Hi, As a non-durty solution you can set G4WORKDIR to ./ (I think it is the default) and you add $GATEHOME/tmp/bin/Linux-g++ to your LD_LIBRARY_PATH. That's it ! Cheers, Simon<o:p></o:p> <div> 2009/8/24 Ida H�ggstr�m <<a href="mailto:ida.haggstrom@radfys.umu.se">ida.haggstrom@radfys.umu.se</a>><o:p></o:p> Hello again! I found another solution that I think works just as well, maybe even a better idea! Instead of changing the G4TMP and G4BIN in your make-files, type "make" once first so you get the error about not finding libGate.so.... Look in your gate home directory under temp (gate_v5.0.0/tmp/Linux-g++/Gate) where you should hopefully find a bunch of files, including libGate.so. Copy all those files and move to your working directory under the same path: G4Work/tmp/Linux-g+/Gate. type "make" in your terminal again and I think it should work! It now find all those files... anyway, you should get the executable file "Gate" in your working directory under bin/Linux-g++ I think. You have to copy the libGate.so file into that same directory otherwise it will not be found when trying to run Gate... hope this helps! worked for me anyways! Ida <o:p></o:p> <div> Den 24 augusti 2009 08.15 skrev Ida H�ggstr�m <<a href="mailto:ida.haggstrom@radfys.umu.se" target="_blank">ida.haggstrom@radfys.umu.se</a>>:<o:p></o:p> <div> <div> <blockquote style='border:none;border-left:solid #CCCCCC 1.0pt;padding:0in 0in 0in 6.0pt; margin-left:4.8pt;margin-right:0in'> <o:p> </o:p> Hi Yonggang! I encountered the exact same error when I tried to compile Gate 5.0.0... (could not find libGate.so). I noticed that the compilation of the subdirs (arf, physics, management etc) was ok and that all those .o-files ended up in my G4INSTALL directory under G4INSTALL/tmp/Linux-g++/Gate. If you open the GATE GNUMakefile that you run you see that G4TMP and G4BIN paths are set to your working directory by default (at least for me): G4WORKDIR/tmp G4WORKDIR/bin When compiling I think it looks there for the just created .o-files! Anyway, I changed those paths to G4INSTALL/tmp G4INSTALL/bin In all the subdirs (arf, physics etc) there's another makefile where G4TMP and G4BIN are defined again (don't know why!). I simply commented those commands so I only had to set them in the main make-file and everything compiled without problems for me... Good luck! Ida<o:p></o:p> <div> 2009/8/22 Cui, Yonggang <<a href="mailto:ycui@bnl.gov" target="_blank">ycui@bnl.gov</a>><o:p></o:p> <div> <div> <div link=blue vlink=purple> <div> Hi All,<o:p></o:p>  <o:p></o:p> I have compiled GATE 4.0.0 successfully before.  Today, I tried to install GATE 5.0.0.<o:p></o:p>  <o:p></o:p> When I compile it, I got the following errors:<o:p></o:p>  <o:p></o:p> ***************************************************<o:p></o:p> Making dependency for file Gate.cc ...<o:p></o:p> In file included from ./source/mandatory_G4_classes/include/GateSteppingAction.h<o:p></o:p> h:34,<o:p></o:p>                  from Gate.cc:34:<o:p></o:p> ./source/output/include/GateTrack.hh:10:19: TROOT.h: No such file or directory<o:p></o:p> ./source/output/include/GateTrack.hh:11:19: TTree.h: No such file or directory<o:p></o:p> Entering source/arf ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/arf finished<o:p></o:p> Entering source/geometry ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/geometry finished<o:p></o:p> Entering source/digitizer ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/digitizer finished<o:p></o:p> Entering source/output ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/output finished<o:p></o:p> Entering source/physics ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/physics finished<o:p></o:p> Entering source/voxel ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/voxel finished<o:p></o:p> Entering source/mandatory_G4_classes ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/mandatory_G4_classes finished<o:p></o:p> Entering source/management ...<o:p></o:p> make[1]: Nothing to be done for `obj'.<o:p></o:p> source/management finished<o:p></o:p> Creating shared library /home1/ycui/G4Work/tmp/Linux-g++/Gate/libGate.so ...<o:p></o:p> g++: *.o: No such file or directory<o:p></o:p> make: *** [/home1/ycui/G4Work/tmp/Linux-g++/Gate/libGate.so] Error 1<o:p></o:p> ****************************************************<o:p></o:p>  <o:p></o:p> It seems that GateTrack.hh is a new header file introduced in Gate 5.0.0.  How can I correct the error?<o:p></o:p>  <o:p></o:p> Thanks in advance.<o:p></o:p>  <o:p></o:p> Yonggang<o:p></o:p> </div> </div> <o:p> </o:p> </div> </div> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.healthgrid.org" target="_blank">Gate-users@lists.healthgrid.org</a> <a href="http://lists.healthgrid.org/mailman/listinfo/gate-users" target="_blank">http://lists.healthgrid.org/mailman/listinfo/gate-users</a><o:p></o:p> </div> <o:p> </o:p> </blockquote> </div> </div> </div> _______________________________________________ Gate-users mailing list <a href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</a> <a href="http://lists.healthgrid.org/mailman/listinfo/gate-users" target="_blank">http://lists.healthgrid.org/mailman/listinfo/gate-users</a><o:p></o:p> </div> <o:p> </o:p> </div> </body> </html>