<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html> <head> <meta content="text/html;charset=UTF-8" http-equiv="Content-Type"> <title></title> </head> <body bgcolor="#ffffff" text="#000000"> Dear Edo, Thanks a lot, this solved the problem! Finally I am ready to use Gate... Thankful from Vienna, Albert Edoardo Pasca wrote: <blockquote cite="mid:1235462888.4048.7.camel@localhost" type="cite"> <pre wrap="">On Tue, 2009-02-24 at 08:41 +0100, Albert Hirtl wrote: </pre> <blockquote type="cite"> <pre wrap="">Dear Gate users, I am trying to install gate_v4.0.0 on Scientific Linux 5.2 with geant4.9.1.p02, root_v5.14 and CLHEP_v2.0.3.2. However, after compiling gate, which goes fine, except for two warnings along the way: -- Compiling GateEcatAccelSystem.cc ... /opt/PETMC/ECAT/include/machine_indep.h:23: error: declaration of C function ‘void swab(const void*, void*, size_t)’ conflicts with /usr/include/unistd.h:1086: error: previous declaration ‘void swab(const void*, void*, ssize_t)’ here </pre> </blockquote> <pre wrap=""> It is a problem with the ECAT library. I seem to remember that you have to remove the definition of swab() function in the machine_indep.h . In any case I send you the machine_indep.h that I used. Please, for further info read the Gate UserGuide v4.0.0 at section 10.6.1 Edo </pre> <blockquote type="cite"> <pre wrap="">/opt/PETMC/clhep-2.0.3.2/include/CLHEP/Units/PhysicalConstants.h:78: warning: ‘CLHEP::electron_charge’ defined but not used /opt/PETMC/clhep-2.0.3.2/include/CLHEP/Random/Randomize.h:67: warning: ‘CLHEP::HepRandomGenActive’ defined but not used make[1]: *** [../../tmp/Linux-g++/Gate/GateEcatAccelSystem.o] Error 1 -- and -- Compiling GateSinoAccelToEcat7.cc ... /opt/PETMC/ECAT/include/machine_indep.h:23: error: declaration of C function ‘void swab(const void*, void*, size_t)’ conflicts with /usr/include/unistd.h:1086: error: previous declaration ‘void swab(const void*, void*, ssize_t)’ here /opt/PETMC/clhep-2.0.3.2/include/CLHEP/Units/PhysicalConstants.h:78: warning: ‘CLHEP::electron_charge’ defined but not used /opt/PETMC/clhep-2.0.3.2/include/CLHEP/Random/Randomize.h:67: warning: ‘CLHEP::HepRandomGenActive’ defined but not used make[1]: *** [../../tmp/Linux-g++/Gate/GateSinoAccelToEcat7.o] Error 1 -- the following problem occurs during linking Gate: ---- source/management finished Using granular libraries ... Linking Gate ... ./tmp/Linux-g++/Gate/libGate.a(GateDetectorConstruction.o): In function `GateDetectorConstruction::BuildSurfaces()': GateDetectorConstruction.cc:(.text+0x189): undefined reference to `GateObjectCreatorStore::GetInstance()' GateDetectorConstruction.cc:(.text+0x1a6): undefined reference to `GateSurfaceList::BuildSurfaces()' ./tmp/Linux-g++/Gate/libGate.a(GateDetectorConstruction.o): In function `GateDetectorConstruction::GateDetectorConstruction()': GateDetectorConstruction.cc:(.text+0x637): undefined reference to `GateObjectCreatorStore::GetInstance()' GateDetectorConstruction.cc:(.text+0x63f): undefined reference to `GateSystemListManager::GetInstance()' ./tmp/Linux-g++/Gate/libGate.a(GateDetectorConstruction.o): In function `GateDetectorConstruction::GateDetectorConstruction()': GateDetectorConstruction.cc:(.text+0xb97): undefined reference to `GateObjectCreatorStore::GetInstance()' GateDetectorConstruction.cc:(.text+0xb9f): undefined reference to `GateSystemListManager::GetInstance()' ./tmp/Linux-g++/Gate/libGate.a(GateDigitizer.o): In function `GateDigitizer::~GateDigitizer()': GateDigitizer.cc:(.text+0x2042): undefined reference to `vtable for GateNamedObject' GateDigitizer.cc:(.text+0x214b): undefined reference to `vtable for GateNamedObject' ..... lots of error messages of the same kind .... GateArrayRepeaterMessenger.cc:(.text+0x39d): undefined reference to `GateObjectRepeaterMessenger::SetNewValue(G4UIcommand*, G4String)' ./tmp/Linux-g++/Gate/libGate.a(GateArrayRepeaterMessenger.o): In function `GateArrayRepeaterMessenger::GateArrayRepeaterMessenger(GateArrayRepeater*)': GateArrayRepeaterMessenger.cc:(.text+0x51a): undefined reference to `GateObjectRepeaterMessenger::GateObjectRepeaterMessenger(GateVObjectRepeater*)' GateArrayRepeaterMessenger.cc:(.text+0xa31): undefined reference to `GateObjectRepeaterMessenger::~GateObjectRepeaterMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateArrayRepeaterMessenger.o): In function `GateArrayRepeaterMessenger::GateArrayRepeaterMessenger(GateArrayRepeater*)': GateArrayRepeaterMessenger.cc:(.text+0xdaa): undefined reference to `GateObjectRepeaterMessenger::GateObjectRepeaterMessenger(GateVObjectRepeater*)' GateArrayRepeaterMessenger.cc:(.text+0x12c1): undefined reference to `GateObjectRepeaterMessenger::~GateObjectRepeaterMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateArrayRepeaterMessenger.o): In function `GateArrayRepeaterMessenger::~GateArrayRepeaterMessenger()': GateArrayRepeaterMessenger.cc:(.text+0x116): undefined reference to `GateObjectRepeaterMessenger::~GateObjectRepeaterMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateArrayRepeaterMessenger.o): In function `GateArrayRepeaterMessenger::~GateArrayRepeaterMessenger()': GateArrayRepeaterMessenger.cc:(.text+0x196): undefined reference to `GateObjectRepeaterMessenger::~GateObjectRepeaterMessenger()' ./tmp/Linux-g++/Gate/libGate.a(GateArrayRepeaterMessenger.o):(.rodata._ZTI26GateArrayRepeaterMessenger[typeinfo for GateArrayRepeaterMessenger]+0x8): undefined reference to `typeinfo for GateObjectRepeaterMessenger' collect2: ld returned 1 exit status make: *** [bin/Linux-g++/Gate] Error 1 ---- Does anybody have an idea what is going wrong? I am somewhat desperate, since I already tried lots of things and I am running out of ideas. Help would be very much appreciated! Cheers, Albert </pre> </blockquote> </blockquote> <pre class="moz-signature" cols="72">-- Albert Hirtl Medizinische Universität Wien Universitätsklinik für Nuklearmedizin Allgemeines Krankenhaus Wien Währinger Gürtel 18-20 1090 Wien Austria Tel.: +43 (0) 1 / 40400 5545 Web: <a class="moz-txt-link-freetext" href="http://www.meduniwien.ac.at/nuklear/">http://www.meduniwien.ac.at/nuklear/</a> </pre> </body> </html>