<html> <head> <style> .hmmessage P { margin:0px; padding:0px } body.hmmessage { font-size: 10pt; font-family:Verdana } </style> </head> <body class='hmmessage'> Thank you, it works well. <HR id=stopSpelling> Date: Fri, 19 Dec 2008 11:38:37 +0100 From: gate.stute@gmail.com To: gjtian@hotmail.com Subject: Re: Re : [Gate-users] GATE and GEANT Install CC: dounia84@aol.com; gate-users@lists.healthgrid.org Hi, I made the modification in the variables.gmk file (that is used by the GNUmakefile of Gate). Just replace the old file by this new one and recompile Gate. (I just replaced the manual ROOT library links by a call of the program root-config with the option --libs). Hope it will work, Simon <DIV class=EC_gmail_quote>2008/12/19 TienGarry <<A href="mailto:gjtian@hotmail.com">gjtian@hotmail.com</A>> <BLOCKQUOTE class=EC_gmail_quote style="PADDING-LEFT: 1ex"> <DIV>When I make GATE4.0 I get the link errors: Linking Gate ... /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(double*&)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::SetReadParam(int)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TThread::TThread(char const*, void* (*)(void*), void*, TThread::EPriority)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(float const*, int)' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::GaussIntegrator()' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `typeinfo for TSQLResult' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `vtable for TSQLRow' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::GetLastProcessID(TRefTable*) const' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::GetTRefExecId()' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `TMath::ErfInverse(double)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteObjectClass(void const*, TClass const*)' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `TMath::Beta(double, double)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::ReadVersion(unsigned int*, unsigned int*, TClass const*)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(long const*, int)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TThread::Run(void*)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteProcessID(TProcessID*)' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::~BrentMinimizer1D()' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteVersionMemberWise(TClass const*, bool)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TKey::Hash() const' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `gRandom' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `typeinfo for TSQLRow' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `ROOT::Math::RootFinder::RootFinder(ROOT::Math::RootFinder::EType)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `int TStreamerInfo::ReadBuffer<char**>(TBuffer&, char** const&, int, int, int, int)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(long*)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TKey::Streamer(TBuffer&)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TStreamerInfo::ReadBufferClones(TBuffer&, TClonesArray*, int, int, int)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TMutex::TMutex(bool)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteObject(TObject const*)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(int const*, int)' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `TMath::BesselK0(double)' /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TMessage::Class()' /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `TMath::StruveH0(double)' collect2: ld returned 1 exit status make: *** [bin/Linux-g++/Gate] Error 1 I search this error, some got the same errors with me, when he make a program based on ROOT, <A href="http://root.cern.ch/phpBB2/viewtopic.php?t=7404&view=next&sid=da48524ef4f7180111d474d40b64e1f8">http://root.cern.ch/phpBB2/viewtopic.php?t=7404&view=next&sid=da48524ef4f7180111d474d40b64e1f8</A> Someone answer the question like this: You need to link against the libraries you use. Call `root-config --libs` instead of -lWhatever in your Makefile. How can I solve it for gate, how to modify gate makefile? Thx. <HR> To: <A href="mailto:gjtian@hotmail.com">gjtian@hotmail.com</A>; <A href="mailto:gate.stute@gmail.com">gate.stute@gmail.com</A> <DIV class=EC_Ih2E3d> Subject: Re : [Gate-users] GATE and GEANT Install </DIV>Date: Thu, 18 Dec 2008 07:58:50 -0500 From: <A href="mailto:dounia84@aol.com">dounia84@aol.com</A> <DIV class=EC_Ih2E3d> CC: <A href="mailto:gate-users@lists.healthgrid.org">gate-users@lists.healthgrid.org</A> </DIV> <DIV> <DIV></DIV> <DIV class=EC_Wj3C7c> <DIV>Hello, i am having some pb with ecat7 output. Although gate tells me that ecat7 output is enabled i still get : </DIV>Output module: 'sinogram'  >> Job:                                 build a set of 2D sinograms from a PET simulation  >> Is enabled ?                         Yes  >> Number of crystals per crystal ring: 0  >> Number of crystal rings:             0  >> Number of radial sinogram bins:      0  >> Filled ?                             No  >> Attached to system:                  systems/ecat  >> Input data:                          finalCoinc/gate/output/ecat7/enable ***** COMMAND NOT FOUND </gate/output/ecat7/enable> ***** ***** Batch is interupted!! ***** I don`t get why i have zero crystals... <DIV>If you had this problem already please tell me what you did to solve it. It has been a long long time that i  am stuck with this! thank you in advance. Dounia Taleb. </DIV> </DIV></DIV> <DIV class=EC_Ih2E3d> <HR> 使用新一代 Windows Live Messenger 轻松交流和共享！ <A href="http://im.live.cn/">立刻下载！</A></DIV></DIV></BLOCKQUOTE></DIV> <hr />更多热辣资讯尽在新版MSN首页！ <a href='http://cn.msn.com/' target='_new'>立刻访问！</a></body> </html>