<html> <head> <style> .hmmessage P { margin:0px; padding:0px } body.hmmessage { font-size: 10pt; font-family:Verdana } </style> </head> <body class='hmmessage'> Solved, thanks.   <HR id=stopSpelling> From: gjtian@hotmail.com To: gate.stute@gmail.com Subject: RE: [Gate-users] GATE and GEANT Install Date: Thu, 18 Dec 2008 19:42:03 +0800 CC: gate-users@lists.healthgrid.org <STYLE> .ExternalClass .EC_hmmessage P {padding:0px;} .ExternalClass body.EC_hmmessage {font-size:10pt;font-family:Verdana;} </STYLE> Thank you for your help. This is the libxml2 install information. I can find the libxml2.a libxml2.la libxml2.so libxml2.so2 libxml2.so.2.6.3 in /usr/lib gary@polyu-gary:~$ sudo apt-get install libxml2 Reading package lists... Done Building dependency tree       Reading state information... Done libxml2 is already the newest version. The following packages were automatically installed and are no longer required:   kdelibs-data cvs Use 'apt-get autoremove' to remove them. 0 upgraded, 0 newly installed, 0 to remove and 9 not upgraded. But I still get the error like this: ./source/digitizer/include/GateHitFileReader.hh:50:19: error: TROOT.h: No such file or directory ./source/digitizer/include/GateHitFileReader.hh:51:19: error: TFile.h: No such file or directory ./source/digitizer/include/GateHitFileReader.hh:52:19: error: TTree.h: No such file or directory It seems that I need these header files. Do I need to add /usr/lib into the LD_LIBRARY_PATH? <HR id=EC_stopSpelling> Date: Thu, 18 Dec 2008 12:01:08 +0100 From: gate.stute@gmail.com To: gjtian@hotmail.com Subject: Re: [Gate-users] GATE and GEANT Install CC: gate-users@lists.healthgrid.org Hi, Just install the libxml2 library and its headers, recompile Gate and it will be ok, finally ! Cheers, Simon <DIV class=EC_EC_gmail_quote>On Thu, Dec 18, 2008 at 2:50 AM, TienGarry <<A href="mailto:gjtian@hotmail.com">gjtian@hotmail.com</A>> wrote: <BLOCKQUOTE class=EC_EC_gmail_quote style="PADDING-LEFT: 1ex"> <DIV>Hi, ALL I installed geant, root, clhep, and lmf3.0 successfully. After the geant4 installation, I can find the env.sh script file in two paths in my system. /home/gary/GATE4.0/geant4.9.1.p03/.config/bin/Linux-g++ /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4/.config/bin/Linux-g++ when I type gary@polyu-gary:~/GATE4.0/geant4.9.1.p03$ source /home/gary/GATE4.0/geant4.9.1.p03/.config/bin/Linux-g++ or gary@polyu-gary:~/GATE4.0/geant4.9.1.p03$ source /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4/.config/bin/Linux-g++/env.sh I can get the following information: On this machine the G4SYSTEM=Linux-g++ On this machine the G4INSTALL=/home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4 On this machine the G4LIB=/home/gary/GATE4.0/geant4.9.1.p03/install/lib/geant4 On this machine the G4LEVELGAMMADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/PhotonEvaporation2.0 On this machine the G4RADIOACTIVEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/RadioactiveDecay3.2 On this machine the G4LEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4EMLOW5.1 On this machine the G4NEUTRONHPDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4NDL3.12 On this machine the G4ABLADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4ABLA3.0 On this machine the CLHEP_BASE_DIR=/home/gary/GATE4.0/CLHEP/install On this machine the CLHEP_INCLUDE_DIR=/home/gary/GATE4.0/CLHEP/install/include On this machine the CLHEP_LIB_DIR=/home/gary/GATE4.0/CLHEP/install/lib On this machine the CLHEP_LIB=CLHEP On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1 On this machine the G4VIS_USE_RAYTRACERX=1 On this machine the XMFLAGS= On this machine the XMLIBS= On this machine the XMFLAGS= On this machine the XAWFLAGS= On this machine the XAWLIBS= On this machine the G4LIB_BUILD_SHARED=1 On this machine the G4LIB_USE_GRANULAR=1 On this machine the G4UI_USE_TCSH=1 LD_LIBRARY_PATH is set to include CLHEP and Geant4 libraries. NOTE : verify that the correct path for the CLHEP library - $CLHEP_BASE_DIR/lib - is included in the $LD_LIBRARY_PATH variable in your environment, and no other outdated installations of CLHEP are by chance referenced through $LD_LIBRARY_PATH and present in your system ! But for my gate4 installation, I follow the guide, gary@polyu-gary:~/GATE4.0/gate_v4.0.0$ exprot G4VERSION=9.1 then copy geant env.sh file into path G4INSTALL=/home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4, then type gary@polyu-gary:~/GATE4.0/gate_v4.0.0$ source env_gate.sh I can get: G4WORKDIR set to . G4TMP set to ./tmp G4BIN set to ./bin Data analysis and output features enabled Ascii data output enabled Transport and generation of optical photons is enabled Use of ROOT disabled ROOT real-time plotter disabled LMF data output disabled ECAT7 data output disabled GATEHOME is set to /home/gary/GATE4.0/gate_v4.0.0 Checking your path variable...  ==> OK: /home/gary/GATE4.0/gate_v4.0.0/bin/Linux-g++ is already in your path variable G4VERSION9 is set: GATE is compatible with the geant4 version 9.1 Done gary@polyu-gary:~/GATE4.0/gate_v4.0.0$ make I get the following errors. Entering source/geometry ... Making dependency for file src/GateSurface.cc ... /bin/sh: xml2-config: not found In file included from src/GateSurface.cc:18: ../management/include/GateXMLDocument.hh:19:30: error: libxml/xmlmemory.h: No such file or directory ../management/include/GateXMLDocument.hh:20:27: error: libxml/parser.h: No such file or directory Compiling GateSurface.cc ... /bin/sh: xml2-config: not found In file included from src/GateSurface.cc:18: ../management/include/GateXMLDocument.hh:19:30: error: libxml/xmlmemory.h: No such file or directory ../management/include/GateXMLDocument.hh:20:27: error: libxml/parser.h: No such file or directory In file included from src/GateSurface.cc:18: ../management/include/GateXMLDocument.hh:28: error: 'xmlNodePtr' does not name a type ../management/include/GateXMLDocument.hh:62: error: 'xmlDocPtr' does not name a type ../management/include/GateXMLDocument.hh:63: error: 'xmlNodePtr' does not name a type /home/gary/GATE4.0/CLHEP/install/include/CLHEP/Units/PhysicalConstants.h:78: warning: 'CLHEP::electron_charge' defined but not used make[1]: *** [../../tmp/Linux-g++/Gate/GateSurface.o] Error 1 source/geometry finished Entering source/digitizer ... make[1]: Nothing to be done for `obj'. source/digitizer finished Entering source/output ... make[1]: Nothing to be don If I define $ROOT_SYS and $LMF_HOME, I still can not make gate sucessfully. Pls help me, guys, I spent a lot of time on it, but can not make it. This is the last step for me to become a real GATE USER. Thank you so much. <HR> MSN保护盾，十八般武艺保障MSN安全！ <A href="http://im.live.cn/safe/">现在就下载！</A></DIV> _______________________________________________ Gate-users mailing list <A href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</A> <A href="http://lists.healthgrid.org/mailman/listinfo/gate-users">http://lists.healthgrid.org/mailman/listinfo/gate-users</A> </BLOCKQUOTE></DIV> <HR> MSN保护盾，十八般武艺保障MSN安全！ <A href="http://im.live.cn/safe/">现在就下载！</A> <hr />使用新一代 Windows Live Messenger 轻松交流和共享！ <a href='http://im.live.cn/' target='_new'>立刻下载！</a></body> </html>