<div dir="ltr" align="left"><pre>I took a look at the GNUmakefile for Version 4. Please note that the link of Gate to root libraries has been put in variables.gmk.</pre> </div> <div dir="ltr" align="left">In variables.gmk, you see </div> EXTRALIBS += -L$(ROOTSYS)/lib \ -lCore -lCint \ -lHist -lGraf -lGraf3d -lGpad \ -lTree -lRint -lPostscript \ -lMatrix -lPhysics \ -lm -ldl -lpthread -rdynamic <div dir="ltr" align="left">Please use your output to replace it.</div> <div dir="ltr" align="left"> </div> <div dir="ltr" align="left">Good luck!</div> <div> <blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid"> <div> <div lang="en-us" dir="ltr" align="left"> <hr> From: <a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:dounia84@aol.com" target="_blank">dounia84@aol.com</a> [mailto:<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:dounia84@aol.com" target="_blank">dounia84@aol.com</a>] Sent: Tuesday, August 26, 2008 11:21 AM To: Huang, Zhibin Subject: Re : [Gate-users] Error compiling GATE version 4  </div> <div></div>okay eventually this worked fine: dounia@ordinator:~/gate/gate_v4.0.0$ root-config --libs -L/home/dounia/gate/root/lib -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -pthread -lm -ldl -rdynamic but then my gnumakefile for gate never talks about root or rootsys so i dont know how to add it. actually the right path for root header is it rootsys?How and where should I add the libraries (above)? I have no idea... could you help. Thanks. dounia <div>  </div> <div>  </div>-----E-mail d'origine----- De : Zhibin Huang <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:zhibin.huang@osumc.edu" target="_blank">zhibin.huang@osumc.edu</a>> A : KB <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:kd8had@gmail.com" target="_blank">kd8had@gmail.com</a>> Cc : <a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:gate-users@lists.healthgrid.org" target="_blank">gate-users@lists.healthgrid.org</a> Envoyé le : Samedi, 23 Août 2008 0:30 Sujet : Re: [Gate-users] Error compiling GATE version 4 <div> <div dir="ltr">I posted my webpage which is useful at this problem. Basically, the linkage of Gate to ROOT failed. Because you are using a high version of ROOT and GNUmakefile for gate_v3.1.2 is designed for ROOT5.14. Then you have to modify it by looking at root libraries in your teminal window: root-config --libs Use the output to replace the old one in GNUmakefile. Then the compilation should be successful. For details, please see: <a onclick="return top.js.OpenExtLink(window,event,this)" href="https://filer.case.edu/%7Ezxh6/data/daily-log" target="_blank">https://filer.case.edu/~zxh6/data /daily-log</a> and search for root-config --libs Good luck! <div class="gmail_quote">On Fri, Aug 22, 2008 at 4:21 PM, KB <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:kd8had@gmail.com" target="_blank">kd8had@gmail.com</a>> wrote: <blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0pt 0pt 0pt 0.8ex; BORDER-LEFT: rgb(204,204,204) 1px solid">Hello All,   I have the following installed : clhep-2.0.3.2    geant4.9.1.p02 root_v5.20.00 and the LD_LIBRARY_PATH variables set, but cannot seem to compile GATE. Any ideas about the error messages I get? I have tried it with root versions 5.18 and get the same compile errors. When I try to compile the latest version of GATE (4.0) I get the following errors: ... ... Compiling Gate.cc ... Using granular libraries ... Linking Gate ... ./tmp/Linux-g++/Gate/libGate.a(GateHitFileReader.o): In function `GateHitFileReader::PrepareAcquisition()': GateHitFileReader.cc:(.text+0xe5a): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' ./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In function `GateToRoot::RecordBeginOfAcquisition()': GateToRoot.cc:(.text+0x1e74): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' GateToRoot.cc:(.text+0x20ef): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' ./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In function `GateToRoot::RecordVoxels(GateVGeometryVoxelStore*)': GateToRoot.cc:(. text+0x3903): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(double*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::SetReadParam(int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::TThread(char const*, void* (*)(void*), void*, TThread::EPriority)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(float const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::GaussIntegrator()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TSQLResult' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `vtable for TSQLRow' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::GetLastProcessID(TRefTable*) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::GetTRefExecId()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::ErfInverse(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteObjectClass(void const*, TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Beta(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadVersion(unsigned int*, unsigned int*, TClass const*)' /sha re/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(long const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::Run(void*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteProcessID(TProcessID*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::~BrentMinimizer1D()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteVersionMemberWise(TClass const*, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Hash() const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `gRandom' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TSQLRow' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RootFinder::RootFinder(ROOT::Math::RootFinder::EType)' /share/apps/GATE/root_v5.20.00/root/lib/libPhysics.so: undefined reference to `TMath::ChisquareQuantile(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::TKey(TKey const&)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Hash(void const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::GetMappedObject(unsigned int, void*&, TClass*&) const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussLegendreIntegrator::Integral(double, double)' /share/apps/GATE/root _v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Poisson(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselI1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode, int, void*, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Gaus(double, double, double, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(bool*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::IncrementPidOffset(unsigned short)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Fit::BinData::Add(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `int TStreamerInfo::ReadBuffer<char**>(TBuffer&, char** const&, int, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(long*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Streamer(TBuffer&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::ReadBufferClones(TBuffer&, TClonesArray*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TMutex::TMutex(bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteObject(TObject const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteA rray(int const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselK0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TMessage::Class()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::StruveH0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussLegendreIntegrator::~GaussLegendreIntegrator()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadString(char*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode)' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `ROOT::Fit::BinData::Add(double, double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::~TKey()' /share/apps/GATE/root_v5.20.00/root/lib/libPhysics.so: undefined reference to `TMath::RootsCubic(double const*, double&, double&, double&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ForceWriteInfo(TVirtualStreamerInfo*, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TEmulatedCollectionProxy' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::DeleteBuffer()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArrayFloat16(float*, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteFastArrayDoub le32(double const*, int, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Print(char const*) const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::ACosH(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::TKey()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RichardsonDerivator::~RichardsonDerivator()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::NormQuantile(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TKey' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::LandauI(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::Print(char const*) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::SetWriteParam(int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::GetValueSTL(TVirtualCollectionProxy*, int, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::SetByteCount(unsigned int, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::FDist(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::XMinimum() const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Erfc(double)' /share/apps/GATE/root_v5.20.00/root /lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::FValMinimum() const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ls(char const*) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ShowMembers(TMemberInspector&, char*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::WriteBufferClones(TBuffer&, TClonesArray*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::TFileCacheRead()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadBuf(void*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Fit::BinData::Add(double const*, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::StruveL0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::~TFileCacheRead()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteObjectAny(void const*, TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Freq(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode, int, void*, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::ShowMembers(TMemberInspector&, char*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ForceWriteInfoClones(TClonesArr ay*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::Sort()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselY1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselJ0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadClassBuffer(TClass*, void*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::Exists()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::SelfId()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::KolmogorovProb(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::ASinH(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(unsigned long const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadClass(TClass const*, unsigned int*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::Join(void**)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::CheckObject(void const*, TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadProcessID(unsigned short)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ResetMap()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `int TStreamerInfo::WriteBufferAux<char**>(TBuffe r&, char** const&, int, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileStager::Open(char const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussLegendreIntegrator::SetFunction(ROOT::Math::IBaseFunctionOneDim const&, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RichardsonDerivator::Derivative3(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadObjectAny(TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::StruveH1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteFastArrayFloat16(float const*, int, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(char const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteClassBuffer(TClass*, void*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Read(TObject*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Hypot(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(long long*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussLegendreIntegrator::GaussLegendreIntegrator(int, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RichardsonDerivator::Derivative2(d ouble)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::IncrementLevel(TVirtualStreamerInfo*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::GetValueSTLP(TVirtualCollectionProxy*, int, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::StreamObject(void*, char const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BetaDistI(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::WriteBufferSTLPtrs(TBuffer&, TVirtualCollectionProxy*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::SetFunction(ROOT::Math::IBaseFunctionOneDim const&, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TCondition::TCondition(TMutex*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(int*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::StruveL1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFile::GetRecordHeader(char*, long long, int, int&, int&, int&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ReadObjWithBuffer(char*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BetaCf(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey:: GetIconName() const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::CheckByteCount(unsigned int, unsigned int, TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(long*&)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussLegendreIntegrator::GetWeightVectors(double*, double*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::SetPidOffset(unsigned short)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::~TBufferFile()' /share/apps/GATE/root_v5.20.00/root/lib/libGraf3d.so: undefined reference to `TMath::Normalize(float*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::TKey(TDirectory*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(float*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::InitMap()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadClones(TClonesArray*, int, short)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::ReadBuffer(char*, long long, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BetaDist(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ReadObj()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::IsFolder() const' /share/apps/GATE/r oot_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ReadObjectAny(TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RichardsonDerivator::Derivative1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::Integral(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::LnGamma(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteBuf(void const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ShowMembers(TMemberInspector&, char*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(int*&)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::AdaptiveIntegratorMultiDim::Integral(double const*, double const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::DecrementLevel(TVirtualStreamerInfo*)' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `ROOT::Fit::BinData::Add(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselK1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteString(char const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadDouble32(double*, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Vavilov(double, double, double)' /share /apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TRandom3::~TRandom3()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TSQLRow::ShowMembers(TMemberInspector&, char*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::CauchyDist(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Log2(double)' /share/apps/GATE/root_v5.20.00/root/lib/libPhysics.so: undefined reference to `TMath::Factorial(int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadClassEmulated(TClass*, void*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::MapObject(TObject const*, unsigned int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(short const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::GetVersionOwner() const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::SetFunction(ROOT::Math::IBaseFunctionOneDim const&, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::SetRelTolerance(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::VavilovI(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::StreamObject(void*, std::type_info const&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::StreamObject( TObject*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(double*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Permute(int, int*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::SetCancelOn()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::PoissonI(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselI0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(double const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Gamma(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFile::Open(char const*, char const*, char const*, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadFloat16(float*, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(bool const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ReadBuffer(char*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::ReadBufferSTL(TBuffer&, TVirtualCollectionProxy*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RootFinder::~RootFinder()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadClassBuffer(TClass*, void*, int, unsigned int, unsigned int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::WriteBufferSTL(TBuffer&, TVirtualCollectionProxy*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Erf(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::ATanH(double)' /share/apps/GATE/root_v5.20.00/root/lib/libPhysics.so: undefined reference to `TMath::BubbleHigh(int, double*, int*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::PrintValue(char const*, char*, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::WriteFile(int, TFile*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode, int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselY0(double)' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(long long*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::PrintValueSTL(char const*, TVirtualCollectionProxy*, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(bool*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::SetParent(TObject const*)' /share/apps/GATE/root_v5.20.00/root/lib/l ibHist.so: undefined reference to `TMath::BreitWigner(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::FillBuffer(char*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::GetValue(char*, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `TBufferFile::~TBufferFile()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `vtable for TSQLResult' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TBufferFile' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::SkipObjectAny()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArrayDouble32(double const*, int, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Delete(char const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::GaussIntegrator::~GaussIntegrator()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Keep()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::CheckObject(TObject const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TRandom3::Rndm(int)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Landau(double, double, double, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::CheckByteCount(unsigned int, uns igned int, char const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::TBufferFile(TBuffer::EMode, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(char*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArray(short*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::MapObject(void const*, TClass const*, unsigned int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadStaticArrayDouble32(double*, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::LaplaceDist(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Student(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::AdaptiveIntegratorMultiDim::AdaptiveIntegratorMultiDim(ROOT::Math::IBaseFunctionMultiDim const&, double, double, unsigned int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArrayFloat16(float*&, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::LaplaceDistI(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArrayFloat16(float const*, int, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteDouble32(double*, TStreamerElement*)' /share/apps/G ATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Prob(double, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteClass(TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::BrentMinimizer1D()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArrayDouble32(double*&, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::ReadBufferSTLPtrs(TBuffer&, TVirtualCollectionProxy*, int, int, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(float*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::SetFile(TFile*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::BrentMinimizer1D::Minimize(int, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TCondition::Wait()' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::StudentI(double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TRandom3::TRandom3(unsigned int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteFloat16(float*, TStreamerElement*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::ReadFile()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::StreamObject(void*, TClass const*)' /s hare/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::GetTitle() const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `typeinfo for TFileCacheRead' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Browse(TBrowser*)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BesselJ1(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::GetValueClones(TClonesArray*, int, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `TMath::Quantiles(int, int, double*, double*, double*, bool, int*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::Prefetch(long long, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(short*&)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadArray(char*&)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Gamma(double)' /share/apps/GATE/root_v5.20.00/root/lib/libGraf.so: undefined reference to `ROOT::Fit::BinData::Add(double, double, double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Math::RichardsonDerivator::RichardsonDerivator(double)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::BetaIncomplete(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TStreamerInfo::PrintValueClones(c har const*, TClonesArray*, int, int, int) const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `ROOT::Fit::BinData::Initialize(unsigned int, unsigned int, ROOT::Fit::BinData::ErrorType)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::FDistI(double, double, double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TThread::SetCancelDeferred()' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFile::GetCacheRead() const' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TFileCacheRead::TFileCacheRead(TFile*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Sizeof() const' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::DiLog(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TSQLResult::ShowMembers(TMemberInspector&, char*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(long long const*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::WriteVersion(TClass const*, bool)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TSQLRow::Streamer(TBuffer&)' /share/apps/GATE/root_v5.20.00/root/lib/libHist.so: undefined reference to `TMath::Nint(double)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::ReadObject(TClass const*)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TBufferFile::Writ eClones(TClonesArray*, int)' /share/apps/GATE/root_v5.20.00/root/lib/libTree.so: undefined reference to `TKey::Create(int, TFile*)' collect2: ld returned 1 exit status make: *** [bin/Linux-g++/Gate] Error 1 [root@cluster gate_v4.0.0]# _______________________________________________ Gate-users mailing list <a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:Gate-users@lists.healthgrid.org" target="_blank">Gate-users@lists.healthgrid.org</a> <a onclick="return top.js.OpenExtLink(window,event,this)" href="http://lists.healthgrid.org/mailman/listinfo/gate-users" target="_blank">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </blockquote></div>  </div></div> <div style="FONT-SIZE: 12px; MARGIN: 0px; COLOR: rgb(0,0,0); FONT-FAMILY: Tahoma,Verdana,Arial,Sans-Serif; BACKGROUND-COLOR: rgb(255,255,255)"><pre style="FONT-SIZE: 9pt"><tt>_______________________________________________ Gate-users mailing list <a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:Gate-users@lists.healthgrid.org" target="_blank">Gate-users@lists.healthgrid.org</a> <a onclick="return top.js.OpenExtLink(window,event,this)" href="http://lists.healthgrid.org/mailman/listinfo/gate-users" target="_blank">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </tt></pre></div></div></blockquote></div>