<html><head><style type="text/css"></style></head><body><div style="font-family:Courier New,courier,monaco,monospace,sans-serif;font-size:10pt"><div> The best solution is to downgarde GCC to 4.1.x. Then you can compil all the stuff for Gate without any error. It's better to use ROOT 5.14 for Gate 3.1.2 I've allready do that on Ubuntu 8.04 TSL x64, so I know the relevent packadges are availaible. Best regards, Samuel Burg </div><div style="font-family: Courier New,courier,monaco,monospace,sans-serif; font-size: 10pt;"> <div style="font-family: times new roman,new york,times,serif; font-size: 12pt;">----- Message d'origine ---- De : Zhibin Huang <zxh6@case.edu> À : franklin pereira <pnicholasf@gmail.com> Cc : gate-users@lists.healthgrid.org Envoyé le : Vendredi, 25 Juillet 2008, 21h06mn 36s Objet : Re: [Gate-users] Problems with compiling GATE <div dir="ltr">Recently I successfully installed Gate under Ubuntu8.04 when I used ROOT5.19. It seems that in Ubntu8.04, ROOT5.14 can't be compiled successfully. Before you install GATE, you have to modify the GNUmake file. As a reference, please see the attachment and modify the path properly. My webpage may also be useful for both Gate installation and Ubuntu8.04 configuration: please search for GATE under the link: <a rel="nofollow" target="_blank" href="https://filer.case.edu/%7Ezxh6/data/daily-log">https://filer.case.edu/~zxh6/data/daily-log</a> <div class="gmail_quote">Good luck! On Fri, Jul 25, 2008 at 1:43 PM, franklin pereira <<a rel="nofollow" ymailto="mailto:pnicholasf@gmail.com" target="_blank" href="mailto:pnicholasf@gmail.com">pnicholasf@gmail.com</a>> wrote: <blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Hi, I have a Dell Vostro ( intel core duo processor) with Ubuntu 8.04 installed. The default version of the gcc compiler is 4.2.3 I recently downloaded Gate3.1.2, Geant4 (version 9.0), ROOT (5.14). Geant4 compiled without any problems. However, I am having problems with compiling ROOT-5.14. I get tons of warnings and then the compilation aborts with the following error message: ************************************************************************************************************************* >>  bin/rmkdepend -R -fcint/src/gcc3strm.d -Y -w 1000 -- -pipe -m32 -Wall -W -Woverloaded-virtual -fPIC -Iinclude  -DG__REGEXP -DG__UNIX -DG__SHAREDLIB -DG__OSFDLL -DG__ROOT -DG__REDIRECTIO -DG__STD_EXCEPTION -DG__HAVE_CONFIG -DG__NOMAKEINFO -DG__CINTBODY -Icint/src -pthread -Icint/lib/gcc3strm -D__cplusplus -- cint/src/gcc3strm.cxx g++ -O  -pipe -m32 -Wall -W -Woverloaded-virtual -fPIC -Iinclude -DG__REGEXP -DG__UNIX -DG__SHAREDLIB -DG__OSFDLL -DG__ROOT -DG__REDIRECTIO -DG__STD_EXCEPTION -DG__HAVE_CONFIG -DG__NOMAKEINFO -DG__CINTBODY -Icint/src -pthread -Icint/lib/gcc3strm -o cint/src/gcc3strm.o -c cint/src/gcc3strm.cxx cint/src/gcc3strm.cxx: In function 'int G__G__stream_7_7_0(G__value*, const char*, G__param*, int)': cint/src/gcc3strm.cxx:311: error: 'class std::fpos<__mbstate_t>' has no member named 'operator==' cint/src/gcc3strm.cxx: In function 'int G__G__stream_7_8_0(G__value*, const char*, G__param*, int)': cint/src/gcc3strm.cxx:317: error: 'class std::fpos<__mbstate_t>' has no member named 'operator!=' make: *** [cint/src/gcc3strm.o] Error 1 ************************************************************************************************************************* ROOT 5.20, however, compiles cleanly, but gate will not compile with this version of ROOT as is cannot find the proper function declarations for the various ROOT functions ( the header files are in /root/include and this is passed on to the g++ compiler correctly in the GATE makefile ). A sample of these error messages are: ************************************************************************************************************** >>Using global libraries ... Linking Gate ... /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateHitFileReader.o): In function `GateHitFileReader::PrepareAcquisition()': GateHitFileReader.cc:(.text+0x102a): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In function `GateToRoot::RecordVoxels(GateVGeometryVoxelStore*)': GateToRoot.cc:(.text+0xe47): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In function `GateToRoot::RecordBeginOfAcquisition()': GateToRoot.cc:(.text+0x3fd3): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' GateToRoot.cc:(.text+0x423b): undefined reference to `TFile::TFile(char const*, char const*, char const*, int)' /opt/root/lib/libTree.so: undefined reference to `TFileCacheRead::TFileCacheRead(TFile*, int)' /opt/root/lib/libTree.so: undefined reference to `TFile::GetCacheRead() const' /opt/root/lib/libTree.so: undefined reference to `TBufferFile::WriteClones(TClonesArray*, int)' /opt/root/lib/libTree.so: undefined reference to `TBufferFile::WriteArray(float const*, int)' /opt/root/lib/libTree.so: undefined reference to `TSQLRow::Streamer(TBuffer&)' /opt/root/lib/libTree.so: undefined reference to `TBufferFile::WriteVersion(TClass const*, bool)' /opt/root/lib/libHist.so: undefined reference to `ROOT::Fit::BinData::Initialize(unsigned int, unsigned int, ROOT::Fit::BinData::ErrorType)' /opt/root/lib/libTree.so: undefined reference to `typeinfo for TSQLResult' /opt/root/lib/libTree.so: undefined reference to `TBufferFile::ReadObject(TClass const*)' /opt/root/lib/libTree.so: undefined reference to `TKey::Create(int, TFile*)' ******************************************************************************************************************** My guess is that the function declarations in ROOT5.20 have changed from version 5.14, therefore the conflict. However, I am clueless regarding the compilation errors generated while trying to compile ROOT-5.14. Is this due to the newer version of gcc that comes with the Ubuntu OS ? I am at a loss and would appreciate help regarding this. Thanks a lot, Franklin. _______________________________________________ Gate-users mailing list <a rel="nofollow" ymailto="mailto:Gate-users@lists.healthgrid.org" target="_blank" href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</a> <a rel="nofollow" target="_blank" href="http://lists.healthgrid.org/mailman/listinfo/gate-users">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </blockquote></div> </div> </div></div></div> <hr size="1"> Envoyé avec <a href="http://us.rd.yahoo.com/mailuk/taglines/isp/control/*http://us.rd.yahoo.com/evt=52423/*http://fr.docs.yahoo.com/mail/overview/index.html">Yahoo! Mail</a>. Une boite mail plus intelligente. </a></body></html>