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<div class=Section1>
<p class=MsoPlainText><span lang=EN-GB>Hi José!<o:p></o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB><o:p> </o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB>You have the information about the
voxels numbers (assigned an each organ or tissue) in the parameters file on the
NCAT program. The same information is reproduced in the log file at the moment
of the generation of the phantom files by the program… Is possible to change
these numbers!!<o:p></o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB>You can also check this values if you
visualize your phantom file, using an image software...<o:p></o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-GB style='font-size:10.0pt;font-family:"Comic Sans MS"'>Inside
GATE, probably you don’t see the phantom because you "disable" the
colour attributes in the file where you specify the materials (range.dat file)…<o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-GB style='font-size:10.0pt;font-family:"Comic Sans MS"'>Enable
the colour attributes… See the User’s Guide: page 86.<o:p></o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB><o:p> </o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB>Try to launch the examples in the GATE
distribution package... <o:p></o:p></span></p>
<p class=MsoPlainText><span lang=EN-GB><o:p> </o:p></span></p>
<p class=MsoPlainText>Cheers,<o:p></o:p></p>
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Comic Sans MS"'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#262626'>Susana Branco Silva<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:9.0pt;font-family:"Comic Sans MS";
color:#E36C0A'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:10.0pt;color:navy'><img width=239
height=35 id="Picture_x0020_1" src="cid:image001.gif@01C8C3E6.D3673570"
alt=untitled><o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#595959'>Faculdade de Ciências da Universidade de Lisboa<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#595959'>Campo Grande, 1749-016 Lisboa, Portugal<br>
Phone: (+351) 21 750 01 77 ext.: 20515<br>
Fax: (+351) 21 750 00 30<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#7F7F7F'><a href="mailto:susana.silva@fc.ul.pt"><span lang=FR
style='color:#595959;text-decoration:none'>email: </span><span lang=FR>susana.silva@fc.ul.pt</span></a></span><span
lang=FR style='font-size:8.0pt;font-family:"Calibri","sans-serif";color:#7F7F7F'><o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#595959'>url: </span><u><span lang=EN-US style='font-size:8.0pt;
font-family:"Calibri","sans-serif";color:#7F7F7F'><a href="www.ibeb.fc.ul.pt">www.ibeb.fc.ul.pt</a></span></u><span
lang=EN-US style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#7F7F7F'><o:p></o:p></span></p>
<p class=MsoNormal><span lang=EN-US style='font-size:8.0pt;font-family:"Calibri","sans-serif";
color:#1D1B11'><o:p> </o:p></span></p>
<p class=MsoNormal><span lang=EN-GB style='font-size:10.0pt;font-family:"Comic Sans MS"'><o:p> </o:p></span></p>
<div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'>
<p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:
"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;
font-family:"Tahoma","sans-serif"'> José Ramos [mailto:joserm84@gmail.com] <br>
<b>Sent:</b> domingo, 1 de Junho de 2008 3:13<br>
<b>To:</b> Susana Branco Silva<br>
<b>Subject:</b> Re: [Gate-users] NCAT bin to i33<o:p></o:p></span></p>
</div>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal style='margin-bottom:12.0pt'>Thanks for your help, finally I
could produce the .i33 and .h33 files, with xmedcon, but I can't to
visualize the phantom on Gate. If you worked with MOBY some time ago, what are
the parameters of the general.samp.par archive which I should to change for obtain
the image. <br>
<br>
Thanks again for your help!!<o:p></o:p></p>
<div>
<p class=MsoNormal>2008/5/30 Susana Branco Silva <<a
href="mailto:susana.silva@fc.ul.pt">susana.silva@fc.ul.pt</a>>:<o:p></o:p></p>
<div>
<div>
<p><span lang=EN-GB style='font-size:10.0pt'>Hi José,</span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'>You just need to rename the
file!!! You don't need to do anything else!</span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'>Use the command 'mv':</span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'>mv archive.bin archive.i33 </span><o:p></o:p></p>
<div>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'>Cheers,</span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
<p><span style='font-size:11.0pt;color:#262626'>Susana Branco Silva</span><o:p></o:p></p>
<p><span style='font-size:9.0pt;color:#E36C0A'> </span><o:p></o:p></p>
<p><span style='font-size:10.0pt;color:navy'><img border=0 width=239 height=35
id="_x0000_i1025" src="cid:image001.gif@01C8C3E6.D3673570" alt=untitled></span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#595959'>Faculdade de Ciências da
Universidade de Lisboa</span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#595959'>Campo Grande, 1749-016 Lisboa,
Portugal<br>
Phone: (+351) 21 750 01 77 ext.: 20515<br>
Fax: (+351) 21 750 00 30</span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#7F7F7F'><a
href="mailto:susana.silva@fc.ul.pt" target="_blank"><span lang=FR
style='color:#595959;text-decoration:none'>email: </span><span lang=FR>susana.silva@fc.ul.pt</span></a></span><o:p></o:p></p>
<p><span lang=EN-US style='font-size:8.0pt;color:#595959'>url: </span><u><span
lang=EN-US style='font-size:8.0pt;color:#7F7F7F'><a
href="http://www.ibeb.fc.ul.pt" target="_blank">www.ibeb.fc.ul.pt</a></span></u><o:p></o:p></p>
<p><span lang=EN-US style='font-size:8.0pt;color:#1D1B11'> </span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
</div>
<div style='border:none;border-top:solid windowtext 1.0pt;padding:3.0pt 0cm 0cm 0cm;
border-color:-moz-use-text-color -moz-use-text-color'>
<p><b><span lang=EN-US style='font-size:10.0pt'>From:</span></b><span
lang=EN-US style='font-size:10.0pt'> José Ramos [mailto:<a
href="mailto:joserm84@gmail.com" target="_blank">joserm84@gmail.com</a>] <br>
<b>Sent:</b> sexta-feira, 30 de Maio de 2008 15:04<br>
<b>To:</b> Susana Branco Silva<br>
<b>Subject:</b> Re: [Gate-users] NCAT bin to i33</span><o:p></o:p></p>
</div>
<div>
<div>
<p> <o:p></o:p></p>
<p style='margin-bottom:12.0pt'>Good morning Susana, and thanks for reply<br>
My archive.bin was converted from float to unsigned interger (16bit) format, by
using C++ code, but in the last question I forget to add the ? sign, sorry. The
question is, how I can convert it to .i33?, or what is the software which I
should to use.<br>
<br>
Best regards<o:p></o:p></p>
<div>
<p>2008/5/29 Susana Branco Silva <<a href="mailto:susana.silva@fc.ul.pt"
target="_blank">susana.silva@fc.ul.pt</a>>:<o:p></o:p></p>
<div>
<div>
<p><span style='font-size:10.0pt'>Hi José,</span><o:p></o:p></p>
<p><span style='font-size:10.0pt'> </span><o:p></o:p></p>
<p><span lang=EN-GB>Yes you can! But, you have to be care with one thing: GATE
can't read float data (32 bit)! So you'll need to convert your phantom file to
unsigned integer (16 bit) format (with IDL or MATLAB for instance).</span><o:p></o:p></p>
<p><span lang=EN-GB>The NCAT program produces bin files in float data…</span><o:p></o:p></p>
<p><span lang=EN-GB> </span><o:p></o:p></p>
<p><span lang=EN-GB>Cheers, </span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
<p><span style='font-size:11.0pt;color:#262626'>Susana Branco Silva</span><o:p></o:p></p>
<p><span style='font-size:9.0pt;color:#E36C0A'> </span><o:p></o:p></p>
<p><span style='font-size:10.0pt;color:navy'><img border=0 width=239 height=35
id="_x0000_i1026" src="cid:image001.gif@01C8C3E6.D3673570" alt=untitled></span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#595959'>Faculdade de Ciências da
Universidade de Lisboa</span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#595959'>Campo Grande, 1749-016 Lisboa,
Portugal<br>
Phone: (+351) 21 750 01 77 ext.: 20515<br>
Fax: (+351) 21 750 00 30</span><o:p></o:p></p>
<p><span style='font-size:8.0pt;color:#7F7F7F'><a
href="mailto:susana.silva@fc.ul.pt" target="_blank"><span lang=FR
style='color:#595959;text-decoration:none'>email: </span><span lang=FR>susana.silva@fc.ul.pt</span></a></span><o:p></o:p></p>
<p><span lang=EN-US style='font-size:8.0pt;color:#595959'>url: </span><u><span
lang=EN-US style='font-size:8.0pt;color:#7F7F7F'><a
href="http://www.ibeb.fc.ul.pt" target="_blank">www.ibeb.fc.ul.pt</a></span></u><o:p></o:p></p>
<p><span lang=EN-US style='font-size:8.0pt;color:#1D1B11'> </span><o:p></o:p></p>
<p><span lang=EN-GB style='font-size:10.0pt'> </span><o:p></o:p></p>
<div style='border:none;border-top:solid windowtext 1.0pt;padding:3.0pt 0cm 0cm 0cm;
border-color:-moz-use-text-color'>
<p><b><span lang=EN-US style='font-size:10.0pt'>From:</span></b><span
lang=EN-US style='font-size:10.0pt'> <a
href="mailto:gate-users-bounces@lists.healthgrid.org" target="_blank">gate-users-bounces@lists.healthgrid.org</a>
[mailto:<a href="mailto:gate-users-bounces@lists.healthgrid.org" target="_blank">gate-users-bounces@lists.healthgrid.org</a>]
<b>On Behalf Of </b>José Ramos<br>
<b>Sent:</b> quinta-feira, 29 de Maio de 2008 20:55<br>
<b>To:</b> <a href="mailto:gate-users@lists.healthgrid.org" target="_blank">gate-users@lists.healthgrid.org</a><br>
<b>Subject:</b> [Gate-users] NCAT bin to i33</span><o:p></o:p></p>
</div>
<div>
<div>
<p> <o:p></o:p></p>
<p>Hi Gate users<br>
Perhaps this is a very elemental question, but I'm so new in GATE users terms.
How I can convert the ncat_output.bin archive, which was obtained with the
general.samp.par to ncat_output.i33 file.<br>
<br>
Best regards from Mexico<br clear=all>
<br>
-- <br>
e- + e+ -> <~~*~~> <o:p></o:p></p>
</div>
</div>
</div>
</div>
</div>
<p><br>
<br clear=all>
<br>
-- <br>
e- + e+ -> <~~*~~> <o:p></o:p></p>
</div>
</div>
</div>
</div>
</div>
<p class=MsoNormal><br>
<br clear=all>
<br>
-- <br>
e- + e+ -> <~~*~~> <o:p></o:p></p>
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