Dear Jonathan,<br><br>I have test my benchmarkPET.mac, right out-of-the box from gate-v3.1.2, and it run exactly as it should, so it seams that your benchmarkPET.mac file has been corrupted.<br><br>Check if the command :<br>"/run/initialize"<br>is call BEFORE the command :<br>"/control/execute digitizer.mac"<br>in your benchmarkPET.mac file.<br><br>For now, I don't see other explaination of your problem.<br><br>So,<br>1) can you send me all your *.mac file in a tar.gz file ?<br>2) try the benchmarkPET.mac file I've attached to this mail.<br>3) if there is error remaining copy-past all the output of Gate in a file and send it to us.<br><br>Regards,<br><br>Samuel<br><br><b><i>kam kim <kimkam007@gmail.com></i></b> a écrit :<blockquote class="replbq" style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;"> <div>Dear Samuel;</div> <div> </div> <div>When I run Gate benchmarkPET.mac, I got errors as follows:</div> <div>***** COMMAND
NOT FOUND </gate/digitizer/Singles/insert adder> *****<br>and</div> <div>***** COMMAND NOT FOUND </gate/output/ascii/setOutFileHitsFlag 0> *****<br> </div> <div>Then I looked at GATE-USER talk. I noticed that you answered a similiar question to MJ. But in my case, the linking gate was successfully done and root version is 5.14. Could you please help me out? Thanks in advance. </div> <div> </div> <div>Best regards,</div> <div>Jonathan</div> <div> </div> <div><br> </div> <div><span class="gmail_quote">On 10/18/07, <b class="gmail_sendername">Samuel BURG</b> <<a href="mailto:samuel_burg@yahoo.fr">samuel_burg@yahoo.fr</a>> wrote:</span> <blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0px 0px 0px 0.8ex; padding-left: 1ex;">Dear Kam Kim,<br><br>I sugjest you to upgrade to version 3.1.2, as last month in a mail from one of the main developer we can read this: <br><br><<<<<br><pre><tt>Dear
Gaters,<br><br>To perform correctly the <span style="font-weight: bold; color: rgb(0, 0, 255);">compressed voxel</span> capabilities and the gamma <br>backtoback emission with the last Gate version (<br>3.1.2), you must use<br> the <br>patch which is provided<br>with this e-mail;<br>Sorry for these inconveniences.<br><br>All the best<br><br>Sebastien</tt></pre><<<<<<br><br>in fact this patch has already been apply on the Gate v3.1.2 available from the download area.<br><br>Second point is that g++/gcc version can matter in compilation error, but I'm not sure it will solve your specific problem.<br><br>Hope this will help,<br><br>best regards, <div><span class="e" id="q_115b1d0c6ca10b6a_1"><br><br>Samuel<br><br><b><i>kam kim <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:kimkam007@gmail.com" target="_blank">kimkam007@gmail.com</a>> </i></b> a écrit : <blockquote style="border-left: 2px solid rgb(16, 16, 255);
padding-left: 5px; margin-left: 5px;">Dear Samuel;<br><br>Thank you for your email. <br><br>In my local linux system, I installed CLHEP1.9.2.2, root5.14, geant4.8.0.p01 and gate_v3.1.1. It seems that this comibination works well, and then I decided to install them into a linux cluster. One possibility could be that linux-gcc or linux-g++ in the cluster is different from that in my local linux system. I don't know whether this would cause any problem. <br><br>Best regards,<br>Jonathan<br><br> <div><span class="gmail_quote">On 10/17/07, <b class="gmail_sendername">Samuel BURG</b> <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:samuel_burg@yahoo.fr" target="_blank">samuel_burg@yahoo.fr </a>> wrote:</span> <blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Well, <br><br>it seems you have a problem with the version of Geant4.<br><br>you should restart the install with
the good versions : <br><br>Gate 3.1.1 + Geant4 8.1p2 + Root 5.12 + clhep <a onclick="return top.js.OpenExtLink(window,event,this)" href="http://1.9.2.3/" target="_blank">1.9.2.3</a><br>or<br>Gate 3.1.2 + Geant4 9.0 + Root 5.14 + clhep <a onclick="return top.js.OpenExtLink(window,event,this)" href="http://1.9.3.1/" target="_blank"> 1.9.3.1</a> / <a onclick="return top.js.OpenExtLink(window,event,this)" href="http://2.0.3.1/" target="_blank">2.0.3.1</a><br><br>don't mix the versions.<br><br>Regards,<br><br>Samuel<br><b><i>kam kim <<a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:kimkam007@gmail.com" target="_blank"> kimkam007@gmail.com </a>></i></b> a écrit : <blockquote style="border-left: 2px solid rgb(16, 16, 255); padding-left: 5px; margin-left: 5px;"> <div><span> <table width="100%"> <tbody> <tr> <td dir="ltr"> <div><font face="Times New Roman,Times,serif"><span> <div></div> <div>Dear All,</div> <div>When I tried to install gate_v3.1.1
in a linux cluster, I got an error as follows:</div> <div>src/GateCompressedVoxelOutput.cc:97: no method 'G4Material::GetMaterialTable' <br>src/GateCompressedVoxelOutPut.cc:130: no method 'G4Material::GetMaterialTable'<br>src/GateCompressedVoxelOutput.cc:131: invalid use of undefined type 'struct G4Material' </div> <div>make: *** Error 1</div> <div>I should point out that I successfully installed root-5.14, CLHEP1.9.2.2 and geant4.8.0.p01 in the cluster. </div> <div>Any suggestion would be appreciated.<br><br>Best regards, <br>Jonathan</div></span></font></div> <div></div></td></tr></tbody></table></span></div>_______________________________________________<br>Gate-users mailing list<br><a onclick="return top.js.OpenExtLink(window,event,this)" href="mailto:Gate-users@lists.healthgrid.org" target="_blank"> Gate-users@lists.healthgrid.org</a><br><a onclick="return top.js.OpenExtLink(window,event,this)" href="http://lists.healthgrid.org/mailman/listinfo/gate-users"
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