<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:st1="urn:schemas-microsoft-com:office:smarttags" xmlns="http://www.w3.org/TR/REC-html40"> <head> <meta http-equiv=Content-Type content="text/html; charset=iso-8859-1"> <meta name=Generator content="Microsoft Word 11 (filtered medium)"> <o:SmartTagType namespaceuri="urn:schemas-microsoft-com:office:smarttags" name="country-region"/> <o:SmartTagType namespaceuri="urn:schemas-microsoft-com:office:smarttags" name="place"/> <o:SmartTagType namespaceuri="urn:schemas-microsoft-com:office:smarttags" name="City"/> <o:SmartTagType namespaceuri="urn:schemas-microsoft-com:office:smarttags" name="time"/>  <style>  </style> </head> <body lang=KO link=blue vlink=blue> <div class=Section1> <div> I found that ECAT sonogram was generated.<o:p></o:p> But ‘gate/output/describe’ says that ECAT was not installed.<o:p></o:p> It is extraordinary.<o:p></o:p> <o:p> </o:p> Anyway, thank you for help.<o:p></o:p> <o:p> </o:p> <o:p> </o:p> </div> <o:p> </o:p> <div> <div class=MsoNormal align=center style='text-align:center'> <hr size=2 width="100%" align=center tabindex=-1> </div> From: gate-users-bounces@lists.healthgrid.org [mailto:gate-users-bounces@lists.healthgrid.org] On Behalf Of JinSu Kim Sent: Thursday, May 03, 2007 <st1:time o:ls="trans" Hour="1" Minute="20" w:st="on">1:20 AM</st1:time> To: gate-users@lists.healthgrid.org Subject: RE: Re: [Gate-users] ECAT7 installation<o:p></o:p> </div> <o:p> </o:p> Thank you for your help<o:p></o:p> ECAT LIBRARY was successfully compiled.<o:p></o:p> <o:p> </o:p> However, ECAT was still not work.<o:p></o:p> I have checked using “gate/output/describe”<o:p></o:p> Result was as followings<o:p></o:p> <o:p> </o:p> ********************************************<o:p></o:p> Number of output modules inserted: 6<o:p></o:p> Description of the single modules:<o:p></o:p> <o:p> </o:p> Output module: 'fastanalysis'<o:p></o:p> Output module: 'analysis'<o:p></o:p> Output module: 'digi'<o:p></o:p> Output module: 'ascii'<o:p></o:p> Output module: 'root'<o:p></o:p> Output module: 'lmf1'<o:p></o:p> <o:p> </o:p> ************************************************<o:p></o:p> <o:p> </o:p> ECAT LIBRARY was not installed <o:p></o:p> What is the problem?<o:p></o:p> <o:p> </o:p> Best regards<o:p></o:p> <o:p> </o:p> JS<o:p></o:p> <div>  <o:p></o:p> </div> <o:p> </o:p> <div> <div class=MsoNormal align=center style='text-align:center'> <hr size=2 width="100%" align=center tabindex=-1> </div> From: gate-users-bounces@lists.healthgrid.org [mailto:gate-users-bounces@lists.healthgrid.org] On Behalf Of Samuel BURG Sent: Wednesday, May 02, 2007 <st1:time o:ls="trans" Hour="23" Minute="38" w:st="on">11:38 PM</st1:time> To: gate-users@lists.healthgrid.org Subject: RE : Re: [Gate-users] ECAT7 installation<o:p></o:p> </div> <o:p> </o:p> In redhat system, swab is declar in /usr/include/unistd.h. For this issue, you can also add this line of code : #ifdef linux /* WHERE IS swab on redhat ??? */ #include </usr/include/unistd.h> #include <sys/types.h> //void swab(const void *src, void *dest, size_t nbytes); #endif Best regards, Samuel BURG Miguel Couceiro <couceiro@lipc.fis.uc.pt> a �crit :<o:p></o:p> Hi Open the file "machine_indep.h", and comment line 23. It should look like this #ifdef linux /* WHERE IS swab on redhat ??? */ #include <sys>//void swab(const void *src, void *dest, size_t nbytes); #endif Hope this helps Miguel �� wrote: > > Hello Gate users > > I have downloaded ecat.tar.gz and I followed the instructions > > After extraction I placed the files into the directories specified in > the GATE User's Guide. > > /usr/local/ecat7/lib/Linux-g++/libecat.a > /usr/local/ecat7/include/matrix.h > /usr/local/ecat7/include/machine_indep.h > > the enviromental variable ECAT7_HOME was set to > "setenv ECAT7_HOME=/usr/local/ecat7" > in the gate_env.csh > > However, during compiling GATE, some errors message was occured as > followings > > > error ************************************** > Compiling GateEcatAccelSystem.cc ... > /usr/local/ecat7/include/machine_indep.h:23: error: declaration of C > function ? void swab(const void*, void*, size_t)??conflicts with > /usr/include/unistd.h:1032: error: previous declaration? void > swab(const void*, void*, ssize_t)??here > make: *** [tmp/Linux-g++/Gate/GateEcatAccelSystem.o] Error 1 > > ******************************************* > > Why this error message was occured? > > Best regards > > JS > > > > > > Following message was displayed when type"source gate_env.csh" > > The current value of G4INSTALL is: /home/gate/geant4.8.1.p02 > The current value of G4VERSION is: 8.0 > Launching Geant4 configuration script /home/gate/geant4.8.1.p02/env.csh > > On this machine the G4SYSTEM=Linux-g++ > On this machine the G4INSTALL=/home/gate/geant4.8.1.p02 > On this machine the G4LIB=/home/gate/geant4.8.1.p02/lib > On this machine the > G4LEVELGAMMADATA=/home/gate/geant4.8.1.p02/data/PhotonEvaporation2.0 > On this machine the > G4RADIOACTIVEDATA=/home/gate/geant4.8.1.p02/data/RadiativeDecay3.0 > On this machine the G4LEDATA=/home/gate/geant4.8.1.p02/data/G4EMLOW4.0 > On this machine the > NeutronHPCrossSections=/home/gate/geant4.8.1.p02/data/G4NDL3.9 > On this machine the > G4ELASTICDATA=/home/gate/geant4.8.1.p02/data/G4ELASTIC1.1 > On this machine the CLHEP_BASE_DIR=/home/gate/clhep_1.9.2.3 > On this machine the CLHEP_INCLUDE_DIR=/home/gate/clhep_1.9.2.3/include > On this machine the CLHEP_LIB_DIR=/home/gate/clhep_1.9.2.3/lib > On this machine the CLHEP_LIB=CLHEP > On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1 > On this machine the G4VIS_USE_OPENGLX=1 > On this machine the XMFLAGS= > On this machine the XMLIBS= > On this machine the XMFLAGS= > On this machine the XMLIBS= > On this machine the XAWFLAGS= > On this machine the XAWLIBS= > On this machine the G4LIB_BUILD_STATIC=1 > On this machine the G4LIB_USE_GRANULAR=1 > On this machine the G4UI_USE_TCSH=1 > In your environment you have the G4WORKDIR=. > Checking your LD_LIBRARY_PATH variable > ==> /home/gate/clhep_1.9.2.3/lib is already in your LD_LIBRARY_PATH > > Configuring GATE options > > G4WORKDIR set to . > G4TMP set to ./tmp > G4BIN set to ./bin > Data analysis and output features enabled > Ascii data output enabled > Transport and generation of optical photons is enabled > Checking your LD_LIBRARY_PATH variable... > ==> OK: /home/gate/root/lib is already in your LD_LIBRARY_PATH > Use of ROOT enabled > ROOT real-time plotter disabled > Checking your LD_LIBRARY_PATH variable... > ==> OK: /home/gate/LMF/lib added to your LD_LIBRARY_PATH > LMF data output enabled > ECAT7 data output enabled > GATEHOME is set to /home/gate/gate_v3.0.0 > Checking your path variable... > ==> OK: /home/gate/gate_v3.0.0/bin/Linux-g++ is already in your path > variable > G4VERSION7_1 is not set: GATE is not compatible with the geant4 > version 7.1 > G4VERSION8_0 is set: GATE is compatible with the geant4 version 8.0 > > Done > > > ------------------------------------------------------------------------ > > _______________________________________________ > Gate-users mailing list > Gate-users@lists.healthgrid.org > http://lists.healthgrid.org/mailman/listinfo/gate-users > begin:vcard fn:Miguel Couceiro n:Couceiro;Miguel org;quoted-printable:Laborat=C3=B3rio de Instrumenta=C3=A7=C3=A3o e F=C3=ADsica Experimental= de Part=C3=ADculas adr;quoted-printable:Universidade de Coimbra;;Departamento de F=C3=ADsica;<st1:City w:st="on">Coimbra</st1:City>;<st1:City w:st="on">Coimbra</st1:City>;3004-516;<st1:place w:st="on"><st1:country-region w:st="on">Portugal</st1:country-region></st1:place> email;internet:couceiro@lipc.fis.uc.pt tel;work:+351 239 833 465 tel;fax:+351 239 822 358 tel;cell:+351 919 841 615 x-mozilla-html:FALSE url:http://mars.fis.uc.pt version:2.1 end:vcard _______________________________________________ Gate-users mailing list Gate-users@lists.healthgrid.org http://lists.healthgrid.org/mailman/listinfo/gate-users<o:p></o:p> <o:p> </o:p> </sys>   <o:p></o:p> <div class=MsoNormal align=center style='text-align:center'> <hr size=1 width="100%" align=center> </div> D�couvrez une nouvelle fa�on d'obtenir des r�ponses � toutes vos questions ! Profitez des connaissances, des opinions et des exp�riences des internautes sur <a href="http://fr.rd.yahoo.com/evt=42054/*http:/fr.answers.yahoo.com">Yahoo! Questions/R�ponses</a>.<o:p></o:p> </div> </body> </html>