<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html> <head> <meta content="text/html;charset=EUC-KR" http-equiv="Content-Type"> <title></title> </head> <body bgcolor="#ffffff" text="#000000"> Hi Kisung Lee, I think this comes from the 2 files that can contain material properties (ie Materials.xml and GateMaterials.db). I get the same message for material I add to my simulation that is defined in GateMaterials.db but not in Materials.xml (so I get a warning for LuYAP but not for Air, since the last one is defined in the 2 files). I do not think it is a real problem since I get the same result with Gate3 than I got with Gate1 (in Gate1 there was no Materials.xml file). But maybe a greater expert than me could comment. Kind regards, Olivier. Kisung Lee wrote: <blockquote cite="mid6545445.1162969096119.JavaMail.nsuser@mail" type="cite"> <style> BODY{FONT-FAMILY: 굴림;FONT-SIZE: 10pt;} DIV,P {FONT-SIZE: 10pt;margin-top:2px;margin-bottom:2px;} </style> Thanks to Dr. Olivier Devroede and Dr. Ernesto, I could fix the previously posted problems. I appreciate all of those who answered my posting.   Now I got other suspicious messaages while I ran benchmarkPET and benchmarkSPECT. I read some postings where the responders said the messages seems OK, but I would like to doublecheck before starting my simulation.   The messages are two types : 'did not load properties table....' and  '... index out of range ... ' Part of the messages  are as follows:   [benchmarkPET]      GateMaterialDatabase: did not load properties table for material 'Lead',      but this need not be a problem.'    GateMaterialDatabase: did not load properties table for material 'Tungsten',      but this need not be a problem.'    GateMaterialDatabase: did not load properties table for material 'BGO',      but this need not be a problem.' ..... Radial nb of layers: 2    GateMaterialDatabase: did not load properties table for material 'Water',      but this need not be a problem.' G4ProcessManager::GetAttribute(): particle[GenericIon]   index out of range   #processes[3]  index [-1] G4ProcessManager::GetAttribute(): particle[GenericIon]   index out of range   #processes[3]  index [-1] -------------------------------------------- Softwares I installed are as follows.   OS: Linux FedoraCore 5 CLHEP 2.0.2.2 Geant4 8.0.p01 Root 5.12  LMF 3.0 Gate 3.0.0 --------------------------------------------   Thank you. Kisung Lee --------------------------- Kongju National University <a class="moz-txt-link-abbreviated" href="mailto:klee@kongju.ac.kr">klee@kongju.ac.kr</a> +82-41-850-8598 (office) +82-10-7344-5970 (cell) --------------------------- <div> </div> ----- 메일의 원문 ----- <div style="background: rgb(228, 228, 228) none repeat scroll 0%; -moz-background-clip: -moz-initial; -moz-background-origin: -moz-initial; -moz-background-inline-policy: -moz-initial;">From: Olivier Devroede <OLIVIER.DEVROEDE@VUB.AC.BE><a class="moz-txt-link-rfc2396E" href="mailto:Olivier.Devroede@vub.ac.be"><Olivier.Devroede@vub.ac.be></a></OLIVIER.DEVROEDE@VUB.AC.BE></div> Sent: Mon Nov 06 18:10:39 KST 2006 To: Kisung Lee <KLEE@KONGJU.AC.KR><a class="moz-txt-link-rfc2396E" href="mailto:klee@kongju.ac.kr"><klee@kongju.ac.kr></a> Cc: <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lists.healthgrid.org">gate-users@lists.healthgrid.org</a> Subject: Re: [Gate-users] Installation problem </KLEE@KONGJU.AC.KR> Hi, The warnings probably mean nothing. In the readme file you can see that it is to be expected. The Materials.xml file error, however, is easy to solve. This file should be present in the directory from which you run Gate. A prepared file exists in the top directory of your Gate installation. Btw, you also need the GateMaterials.db to be present in this directory. Do the following: mkdir GATESIM cd  GATESIM ln -s /yourInstallationPathToGate/Materials.xml ln -s /yourInstallationPathToGate/GateMaterials.db Gate Kind regards, Olivier. Kisung Lee wrote: <blockquote cite="mid2846280.1162740108217.JavaMail.nsuser@mail" type="cite"> <style> BODY{FONT-FAMILY: 굴림;FONT-SIZE: 10pt;} DIV,P {FONT-SIZE: 10pt;margin-top:2px;margin-bottom:2px;} </style> Softwares I installed are as follows.   OS: Linux FedoraCore 5 CLHEP 2.0.2.2 Geant4 8.0.p01 Root 5.12  : binaries for linux-gcc-4.1 LMF 3.0 Gate 3.0.0   When I installed Gate, there were a bunch of warnings but compilation finished without an error. But when I run the gate, I got some suspicious warning message as below.   *************************************************************  Geant4 version Name: geant4-08-00-patch-01    (10-February-2006)                       Copyright : Geant4 Collaboration                       Reference : NIM A 506 (2003), 250-303                             WWW : <a href="http://cern.ch/geant4">http://cern.ch/geant4</a> ************************************************************* I/O warning : failed to load external entity "Materials.xml"    GateMaterialDatabase: did not find the Materials.xml file: no properties read for material 'Air' Visualization Manager instantiating...   Another problem is that when I try to run the gate with command "Gate" only, the main macro file in the directory that I am in was executed automatically. I tryed to uninstall and install again several times but it still happens.   Is there anyone who experienced the same problem as mine? Kisung --------------------------- Kongju National University <a class="moz-txt-link-abbreviated" href="mailto:klee@kongju.ac.kr">klee@kongju.ac.kr</a> +82-41-850-8598 (office) +82-10-7344-5970 (cell) ---------------------------  <img src="http://mail.kongju.ac.kr/servlet/ReadConfirmer?confirmid1162740108214%7Cklee%7Cgate-users@lists.healthgrid.org" moz-do-not-send="true" border="0" height="0" width="0"> <pre wrap=""><hr size="4" width="90%"> _______________________________________________ Gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</a> <a class="moz-txt-link-freetext" href="http://lists.healthgrid.org/mailman/listinfo/gate-users">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </pre> </blockquote> <pre class="moz-signature" cols="72">-- ----------------------------------------------- Groetjes, Dr. Olivier Devroede Vrije Universiteit Brussel dienst ELEM Pleinlaan 2 1050 Brussel Belgium tel : +32 (0)2 629.33.26 mobile: +32 (0)496 40.16.78 fax : +32 (0)2 629.38.16 ----------------------------------------------- </pre> <img moz-do-not-send="true" src="http://mail.kongju.ac.kr/tmpl/web/imgnew/footer_kongju.gif"> <img moz-do-not-send="true" src="http://mail.kongju.ac.kr/servlet/ReadConfirmer?confirmid1162969096114%7Cklee%7Cgate-users@lists.healthgrid.org" border="0" height="0" width="0"> <pre wrap=""> <hr size="4" width="90%"> _______________________________________________ Gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:Gate-users@lists.healthgrid.org">Gate-users@lists.healthgrid.org</a> <a class="moz-txt-link-freetext" href="http://lists.healthgrid.org/mailman/listinfo/gate-users">http://lists.healthgrid.org/mailman/listinfo/gate-users</a> </pre> </blockquote> <pre class="moz-signature" cols="72">-- ----------------------------------------------- Groetjes, Dr. Olivier Devroede Vrije Universiteit Brussel dienst ELEM Pleinlaan 2 1050 Brussel Belgium tel : +32 (0)2 629.33.26 mobile : +32 (0)496 40.16.78 fax : +32 (0)2 629.38.16 ----------------------------------------------- </pre> </body> </html>