<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> <html> <head> <meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type"> <title></title> </head> <body bgcolor="#ffffff" text="#000000"> Hi Ange,<br> <br> You need to create env files and source them or create all the env variables in your .bashrc or .tcshrc file. You have to do it for ROOT as well.<br> <br> Corinne<br> <br> Angela M K Foudray wrote: <blockquote cite="mid1096488474.936.11.camel@med84-189" type="cite"> <pre wrap="">I have found, when I have gotten this error, it's because I haven't setenv the CLHEP variable, and that the CLHEP/lib isn't in my library path. I have CLHEP in /usr/src/, so this is what that section of the file that I source to define my environment variables (i.e. the following lines are in my /usr/src/gate/env_gate.csh file): setenv CLHEP /usr/src/CLHEP if ( ${?LD_LIBRARY_PATH} ) then echo "Checking your LD_LIBRARY_PATH variable..." echo $LD_LIBRARY_PATH | grep ${CLHEP}/lib > /dev/null if ($status) then echo " ==> OK: ${CLHEP}/lib added to your LD_LIBRARY_PATH" setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${CLHEP}/lib else echo " ==> OK: ${CLHEP}/lib is already in your LD_LIBRARY_PATH" endif else echo " ==> ${CLHEP}/lib added to your LD_LIBRARY_PATH" setenv LD_LIBRARY_PATH ${CLHEP}/lib endif Which, now that I am looking at the posts, this is what Ross is saying. Let me know if this doesn't do it. Just make sure you put this in your environment variable file and source it before trying to compile GATE again. Ange On Wed, 2004-09-29 at 03:18, Mutanga Theodore wrote: </pre> <blockquote type="cite"> <pre wrap="">Hello there, I have been trying for two weeks now and still can't get GATE running, right now I have installed Geant4 5.2 and ROOT 3. 10 on REDHAT 9.0 g++ gcc 3.2. When I try to install GATE I get the following error after compiling ... ... ... Creating/replacing object files in /usr/src/geant4.5.2.p02/tmp/Linux-g++/Gate/libGate.a Compiling Gate.cc ... Using granular libraries ... Linking Gate ... /usr/bin/ld: cannot find -lCLHEP collect2: ld returned 1 exit status make: *** [/usr/src/geant4.5.2.p02/bin/Linux-g++/Gate] Error 1 [theodore@c169-69 gate_v1.0.1]# ls Could someone tell me what the erros means ? does it have to do with the CLHEP libraries ? I have then installed in /usr/src/CLHEP/lib Hoping to hear from anyone with suggestions Thanks Theodore </pre> <blockquote type="cite"> <pre wrap="">Hi, No worries Gate tends to be quite tricky to install. Lets do this in steps and see how it goes. Do the install in cshell or tshell (I've been using tshell, type tcsh). Goto cd CLHEP and type ./configure Don't worry about the "** Cannot find include files for C++ run time library. Please add ** the relevant directory to the TOPINCLUDES" message it doesn't seem to cause any problems. Next type pwd Then use this directory in the "!!!" spot on the following command. gmake install prefix="!!!" When you have installed CLHEP we can then move to ROOT or Geant4 and try those. Good luck (and cross your fingers ;)), ross -----Original Message----- From: <a class="moz-txt-link-abbreviated" href="mailto:gate-users-bounces@lphe1pet1.epfl.ch">gate-users-bounces@lphe1pet1.epfl.ch</a> [<a class="moz-txt-link-freetext" href="mailto:gate-users-bounces@lphe1pet1.epfl.ch">mailto:gate-users-bounces@lphe1pet1.epfl.ch</a>] On Behalf Of Mutanga Theodore Sent: Saturday, September 18, 2004 9:15 PM To: <a class="moz-txt-link-abbreviated" href="mailto:corinne.groiselle@umassmed.edu">corinne.groiselle@umassmed.edu</a>; GATE feedback and helpline for Users Subject: Re: [gate-users] UMASS GATE INSTALL GUIDE Hello there, thanks for the installation guide. I have tried to follow it step by step but I'm afraid I still have some major (??) problems. I get the following errors when I try to install CLHEP: [root@c169-69 CLHEP]# ./configure loading cache ./config.cache checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking build system type... i686-pc-linux-gnu checking for cl... no checking for aCC... no checking for cxx... no checking for xlC... no checking for KCC... no checking for CC... no checking for g++... no checking for c++... no checking how to run the C++ preprocessor... (cached) /lib/cpp UNEXPECTED CHOISE OF C++ COMPILER: SELECTED C++ COMPILER: checking for fl32... no checking for f77... no checking for fort77... no checking for xlf... no checking for g77... no checking for f2c... no checking for iostream.h... (cached) no ** Cannot find include files for C++ run time library. Please add ** the relevant directory to the TOPINCLUDES macro in the Makefile(s) FORTRAN needs UNEXPECTED CHOISE OF FORTRAN COMPILER: SELECTED FORTRAN COMPILER: -g -c checking for sin in -lm... (cached) no checking for xdrmem_create in -lrpclib... (cached) no checking for main in -lsun... (cached) no checking for main in -lnsl... (cached) no checking for less... (cached) less checking for mkdirs... (cached) mkdir -p checking for ranlib... (cached) ranlib checking for gawk... (cached) gawk checking for std::stl ... no checking for std::io... no checking for std::ios_base... no checking for <iosfwd>... no checking for <sstream>... no checking for <strstream>... no checking for <strstream.h>... no checking for <cmath>... no checking for problem with const... yes creating ./config.status creating Makefile creating Evaluator/Makefile creating GenericFunctions/Makefile creating Matrix/Makefile creating HepPDT/Makefile creating HepMC/Makefile creating HepMC/include/Makefile creating StdHep/Makefile creating StdHep/include/Makefile creating Vector/Makefile creating Random/Makefile creating RandomObjects/Makefile creating test/Makefile creating Units/Makefile creating Utilities/Makefile creating config/Makefile creating Geometry/Makefile creating config/Makefile.common creating config/CLHEP-i686-pc-linux-gnu-.h config/CLHEP-i686-pc-linux-gnu-.h is unchanged AND I can't run the CREATE commnad, don't know if Im on the righe shell. Ill appreciate more comments and tips, I really have to get this GATE working somehow. Could anyone who has it installed tell me exactly what steps they took in installing it, and also what OS they are using. Thanks in advance _______________________________________________ gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lphe1pet1.epfl.ch">gate-users@lphe1pet1.epfl.ch</a> <a class="moz-txt-link-freetext" href="http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users">http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users</a> _______________________________________________ gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lphe1pet1.epfl.ch">gate-users@lphe1pet1.epfl.ch</a> <a class="moz-txt-link-freetext" href="http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users">http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users</a> </pre> </blockquote> <pre wrap="">_______________________________________________ gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lphe1pet1.epfl.ch">gate-users@lphe1pet1.epfl.ch</a> <a class="moz-txt-link-freetext" href="http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users">http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users</a> </pre> </blockquote> <pre wrap=""> _______________________________________________ gate-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lphe1pet1.epfl.ch">gate-users@lphe1pet1.epfl.ch</a> <a class="moz-txt-link-freetext" href="http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users">http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users</a> </pre> </blockquote> <br> <div class="moz-signature">-- <br> <link rel="important stylesheet" href="chrome://messenger/skin/messageBody.css"> <title>message</title> <div class="moz-text-html" lang="x-western"> <div style="text-align: center;"> <div style="text-align: left;"><br> <hr style="width: 100%; height: 2px;"><font style="color: rgb(102, 102, 102);" size="-1">Corinne J. Groiselle, PhD</font><font style="color: rgb(102, 102, 102);" size="-1"><br style="font-family: times new roman,times,serif;"> </font></div> <div style="text-align: left; font-family: times new roman,times,serif; color: rgb(102, 102, 102);"><font size="-1">Research instructor<br> <br> Division of Nuclear Medicine / Department of Radiology <br> University of Massachusetts Medical School <br> 55 Lake Avenue North<br> Worcester, MA 01655<br> USA<br> <br> <u>phone</u>: (508)-856-6123 - <span style="text-decoration: underline;">fax</span>: (508)-856-4572<br> <u>e-mail</u>: <a class="moz-txt-link-abbreviated" href="mailto:Corinne.Groiselle@umassmed.edu">Corinne.Groiselle@umassmed.edu</a> <br> <u>professional homepage</u>: <a class="moz-txt-link-freetext" href="http://users.umassmed.edu/corinne.groiselle">http://users.umassmed.edu/corinne.groiselle</a><br> <u>personal homepage</u>: <a class="moz-txt-link-freetext" href="http://corinne.groiselle.free.fr">http://corinne.groiselle.free.fr</a></font> </div> </div> <br> <br> </div> </div> </body> </html>